Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011000: Burkholderia cenocepacia J2315 chromosome 1, complete sequence

NCBI: NC_011000

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain is the index strain for transmission among CF patients in the UK. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1183928*21378329856Island text2.5516327.745921.0074Neighbours11BLASTN+IslandViewer 183928.gbk
21023800104949225693Island text3.5829330.477536.9819Neighbours11BLASTN+IslandViewer 1023800.gbk
31216430125200835579Island text4.2111930.692930.5809Neighbours11BLASTN+IslandViewer 1216430.gbk
41262324130995947636Island text1.9824124.638825.6152Neighbours11BLASTN+IslandViewer 1262324.gbk
51397611143503237422Island text2.3103124.441724.4373Neighbours11BLASTN+IslandViewer 1397611.gbk
62514897253518920293Island text1.824918.875120.0264Neighbours11BLASTN+IslandViewer 2514897.gbk
72732330280211469785Island text2.0314323.070924.8402Neighbours11BLASTN+IslandViewer 2732330.gbk
82831183285837827196Island text1.5540122.158722.2297Neighbours11BLASTN+IslandViewer 2831183.gbk
93362382*338176619385Island text3.8223828.971532.1183Neighbours11BLASTN+IslandViewer 3362382.gbk
103409126343481625691Island text1.7623722.087522.9161Neighbours11BLASTN+IslandViewer 3409126.gbk
113493575352198728413Island text1.6471616.375914.0029Neighbours11BLASTN+IslandViewer 3493575.gbk
123514338*356590251565Island text1.6257918.908116.6159Neighbours11BLASTN+IslandViewer 3514338.gbk