Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010718: Natranaerobius thermophilus JW/NM-WN-LF, complete genome

NCBI: NC_010718

Host Lineage: Natranaerobius thermophilus; Natranaerobius; Natranaerobiaceae; Natranaerobiales; Firmicutes; Bacteria

General Information: Natranaerobius thermophilus is a halophilic, alkalithermophilic bacterium isolated from saline lakes in the Wadi El Natrun depression, Egypt.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2007820078Island text3.3391335.676551.4292Neighbours21BLASTN1.gbk
2128423*14742419002Island text2.8172132.435649.3528Neighbours21BLASTN+128423.gbk
3193231*23794944719Island text2.4083525.5844.0047Neighbours21BLASTN+IslandViewer 193231.gbk
4237962*26062622665Island text1.5673922.455635.0225Neighbours21BLASTN+237962.gbk
5304440*32660422165Island text2.6451635.275246.5582Neighbours21BLASTN304440.gbk
646440548434419940Island text2.0331824.154944.2563Neighbours21BLASTN464405.gbk
749722251659019369Island text1.7768125.00336.8863Neighbours21BLASTN+497222.gbk
851747353900921537Island text1.628825.673136.9056Neighbours21+517473.gbk
91229355*124831718963Island text1.9155924.912937.7178Neighbours21BLASTN1229355.gbk
101454087*147302118935Island text2.5018823.978640.3947Neighbours21BLASTN+IslandViewer 1454087.gbk
111865992*188851822527Island text3.0867438.536348.5133Neighbours21BLASTN1865992.gbk
121959517*198298623470Island text2.6508124.252246.7414Neighbours21BLASTN1959517.gbk
132116889*213584318955Island text1.8718724.937237.267Neighbours21BLASTN2116889.gbk
142265447229540429958Island text2.0308426.958242.4641Neighbours21BLASTN+IslandViewer 2265447.gbk
152337209*237318135973Island text1.6908627.711329.016Neighbours21BLASTN+2337209.gbk
162385400240635720958Island text1.6106725.278135.0728Neighbours21BLASTN+2385400.gbk
172460893247899618104Island text1.9611323.692942.5143Neighbours21BLASTN2460893.gbk
182492895*251234319449Island text1.6579224.371837.2061Neighbours212492895.gbk
192513917*254435630440Island text1.6310525.249432.8042Neighbours21BLASTN+2513917.gbk
202551000258559934600Island text1.6872127.166836.945Neighbours21BLASTN+2551000.gbk
212673546269664623101Island text1.5639325.705338.3786Neighbours21BLASTN+2673546.gbk
222860096288159921504Island text2.0529624.827732.172Neighbours21BLASTN+2860096.gbk
232977021299609919079Island text1.7466424.322135.4448Neighbours21BLASTN+2977021.gbk
243039434306069421261Island text1.531124.291744.6827Neighbours213039434.gbk