Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010468: Escherichia coli ATCC 8739, complete genome

NCBI: NC_010468

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149074*6937320300Island text1.8839327.472436.9503Neighbours41BLASTN+49074.gbk
280000*10593725938Island text2.5083735.898416.9643Neighbours41BLASTNIslandViewer 80000.gbk
3111504*13814926646Island text1.3678530.435330.5579Neighbours41BLASTN111504.gbk
423100025334622347Island text2.2857133.041319.5018Neighbours41BLASTN+231000.gbk
561381263388120070Island text1.5811328.621128.0317Neighbours41BLASTN+613812.gbk
669494371914224200Island text2.1309931.09524.0041Neighbours41BLASTNIslandViewer 694943.gbk
7906957*94803541079Island text5.0574543.084316.9195Neighbours41BLASTN+IslandViewer 906957.gbk
81029471*105499125521Island text1.4633631.724227.9876Neighbours41BLASTNIslandViewer 1029471.gbk
91130000*115350023501Island text2.6358636.054425.7055Neighbours41BLASTN+IslandViewer 1130000.gbk
101343228136315119924Island text1.5501329.051248.9118Neighbours51BLASTN+IslandViewer 1343228.gbk
111412791143188119091Island text1.5638129.350131.9345Neighbours41BLASTN+IslandViewer 1412791.gbk
121694729*171759922871Island text1.6437430.542325.0372Neighbours41BLASTN+IslandViewer 1694729.gbk
131775000180518230183Island text5.4677543.149221.2227Neighbours41BLASTNIslandViewer 1775000.gbk
141816359*186342947071Island text1.8785631.210123.8655Neighbours41BLASTNIslandViewer 1816359.gbk
152265423*228519619774Island text1.5577531.684537.4639Neighbours41BLASTN+IslandViewer 2265423.gbk
162345781237145925679Island text1.895830.543521.848Neighbours41BLASTN+IslandViewer 2345781.gbk
172406387*242509318707Island text1.4800428.842443.1782Neighbours41BLASTN+IslandViewer 2406387.gbk
182699000*272285223853Island text2.3864934.588218.0805Neighbours41BLASTNIslandViewer 2699000.gbk
192809125*282748818364Island text1.6333828.626634.0054Neighbours41BLASTN+IslandViewer 2809125.gbk
203209326323524825923Island text1.8301532.468427.5693Neighbours41BLASTN+IslandViewer 3209326.gbk
213835259*385816422906Island text1.7313831.359429.1327Neighbours41BLASTN+3835259.gbk
223970995*399406323069Island text2.0756231.574425.1084Neighbours41BLASTN+3970995.gbk
234059436408235622921Island text1.4907730.617719.6309Neighbours41BLASTN+IslandViewer 4059436.gbk
244252940*428159928660Island text2.301334.5222.4555Neighbours41BLASTN+IslandViewer 4252940.gbk
254305105432709121987Island text1.5163330.64225.8086Neighbours41BLASTN+4305105.gbk
264455201*447359918399Island text1.479538.095853.8677Neighbours51BLASTN4455201.gbk