Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010465: Yersinia pseudotuberculosis YPIII, complete genome

NCBI: NC_010465

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
162348*10809945752Island text2.0437334.161731.3992Neighbours41BLASTN+IslandViewer 62348.gbk
242909545249323399Island text1.5242429.164631.0147Neighbours51BLASTNIslandViewer 429095.gbk
352264954139418746Island text1.7328829.604433.5211Neighbours41BLASTN522649.gbk
466020767915818952Island text1.5413131.501325.0741Neighbours41BLASTN+660207.gbk
573391676156927654Island text2.5188833.30923.2675Neighbours41BLASTN+IslandViewer 733916.gbk
680424984108836840Island text1.4539629.49932.5862Neighbours51BLASTN+IslandViewer 804249.gbk
786840289578227381Island text1.7842435.37140.3587Neighbours41BLASTN+IslandViewer 868402.gbk
889392191618522265Island text2.1929729.36924.4645Neighbours41BLASTNIslandViewer 893921.gbk
9933488*95909925612Island text2.3486333.190129.9281Neighbours41BLASTNIslandViewer 933488.gbk
101118147115423036084Island text4.4418837.928122.8323Neighbours41BLASTN+IslandViewer 1118147.gbk
111273000129080517806Island text1.7433128.954929.4981Neighbours41BLASTN+1273000.gbk
121427170145224325074Island text2.5858234.004617.8331Neighbours53BLASTNIslandViewer 1427170.gbk
131550617157325522639Island text1.6389929.424328.7047Neighbours41BLASTN+1550617.gbk
141724000174609922100Island text1.643432.672755.8533Neighbours51BLASTN1724000.gbk
151790739181268021942Island text1.5888533.8435.2636Neighbours41BLASTN+1790739.gbk
162282874230925826385Island text1.7558829.811230.38Neighbours41BLASTN+2282874.gbk
172383219*240542422206Island text1.8457530.560638.2839Neighbours41BLASTN2383219.gbk
182428620244757218953Island text1.6116129.201124.9239Neighbours41BLASTN2428620.gbk
192582080*260359921520Island text2.2932732.046427.0739Neighbours41BLASTN+2582080.gbk
202820500286978249283Island text1.9879131.96230.4381Neighbours41BLASTN+IslandViewer 2820500.gbk
213046904306991523012Island text1.7052833.437132.7555Neighbours41BLASTN+3046904.gbk
223431500*345664825149Island text2.3964834.333216.043Neighbours41BLASTN+IslandViewer 3431500.gbk
233465351350059935249Island text3.9716337.271824.7477Neighbours21BLASTN+IslandViewer 3465351.gbk
243597000361924222243Island text2.1632532.004530.365Neighbours41BLASTN3597000.gbk
253919572394091021339Island text1.543931.107126.1512Neighbours41BLASTN3919572.gbk
263958766397730818543Island text1.6550428.781631.7883Neighbours41BLASTN3958766.gbk
274222586*424312420539Island text1.9360328.741116.5185Neighbours41BLASTN+4222586.gbk