Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010382: Lysinibacillus sphaericus C3-41, complete genome

NCBI: NC_010382

Host Lineage: Lysinibacillus sphaericus; Lysinibacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Lysinibacillus sphaericus C3-41 was isolated from a mosquito breeding site in China. This organism is highly toxic to Culex species of mosquito. Lysinibacillus sphaericus, formerly Bacillus sphaericus, is a common environmental organism which produces an insecticidal toxin similar to that produced by Bacillus thuringiensis. Lysinibacillus sphaericus produces two proteins during sporulation which accumulate in parasporal crystalline inclusions. These proteins bind in the gastric cavitiy and midgut of the larvae causing disruption of feeding by the infected host and death.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11020516*103923818723Island text1.5078524.635246.0897Neighbours21BLASTN+1020516.gbk
21607013*163059923587Island text1.4998523.084934.9007Neighbours21BLASTN1607013.gbk
33350816337009919284Island text1.5395825.068439.1552Neighbours21BLASTN3350816.gbk
43643288366717823891Island text1.9642722.963738.3074Neighbours21BLASTN+3643288.gbk
53783879380820124323Island text1.4064225.243241.7347Neighbours21BLASTN+3783879.gbk
64479464*449809918636Island text1.5988322.047339.8069Neighbours21BLASTN4479464.gbk