Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009901: Shewanella pealeana ATCC 700345, complete genome

NCBI: NC_009901

Host Lineage: Shewanella pealeana; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This species was isolated from a microbial community colonizing the accessory nidamental gland of the squid Loligo peali (Atlantic squid) for their capacity to respire on sulfur. It was placed in the Shewanella genus based on physiological and biochemical characteristics and 16S rRNA sequence analysis. Shewanella are ubiquitous in marine environment and play very important role in global carbon and nitrogen cycle. The present strain is moderately halophilic, requiring sodium ions for growth. Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11309724*133400224279Island text1.4950129.03723.9798Neighbours21BLASTN1309724.gbk
21516340153887622537Island text2.0719229.324724.2587Neighbours21BLASTN+IslandViewer 1516340.gbk
31693500*173209938600Island text3.888334.261327.0181Neighbours21BLASTNIslandViewer 1693500.gbk
42272206230998537780Island text1.8127129.782619.944Neighbours21BLASTN+IslandViewer 2272206.gbk
52427291245245225162Island text1.8652430.191230.9406Neighbours21BLASTN+IslandViewer 2427291.gbk
62485965250609920135Island text2.1544129.948917.5965Neighbours21BLASTN2485965.gbk
72787978281011422137Island text1.6301929.968330.9792Neighbours21BLASTNIslandViewer 2787978.gbk
82915939*293953323595Island text1.4277531.827639.4202Neighbours21BLASTN+2915939.gbk
93148901317437325473Island text2.0836530.31628.2913Neighbours21BLASTN3148901.gbk
103317068334041323346Island text2.1454729.666236.4234Neighbours213317068.gbk
113563264358409920836Island text2.139830.129315.561Neighbours21BLASTN+IslandViewer 3563264.gbk
124028175404725419080Island text2.2921829.553725.3908Neighbours21BLASTN4028175.gbk
134216206423672120516Island text1.6964829.722813.537Neighbours21BLASTN+IslandViewer 4216206.gbk
144627998465009922102Island text1.6684332.053151.8543Neighbours42BLASTN+4627998.gbk
154899535491945119917Island text1.7193527.434936.4843Neighbours21BLASTN+4899535.gbk