Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009667: Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence

NCBI: NC_009667

Host Lineage: Ochrobactrum anthropi; Ochrobactrum; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Soil bacterium that can cause opportunistic infections. Ochrobactrum anthropi is an opportunistic human pathogen usually causing infection in association with indwelling medical devices, such as catheters and drainage tubes. This organism and related species have also been isolated from soil, activated sludge, and plants. Ochrobactrum anthropi is a Gram-negative, anaerobic, motile bacterium. A common soil bacteria, it was originally considered as an opportunistic pathogen, causing infections in immunocompromised patients, patients with indwelling catheters or peritoneal dialysis but it is now emerging as a more and more important nosocomial pathogen. The first case of human infection was described in 1980. It has been isolated from blood, the urogenital tract, respiratory tract and eyes, and it can be part of the normal intestinal flora. It is resistant to many antibiotics, especially the beta-lactams.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11076718*109886222145Island text1.6317231.391147.7123Neighbours11BLASTN1076718.gbk
21203861*123386330003Island text2.0953236.75128.2509Neighbours11BLASTN+IslandViewer 1203861.gbk
31341000*136313822139Island text1.6096529.439245.7912Neighbours11BLASTN+1341000.gbk
41371924*140112629203Island text2.3908542.114824.4086Neighbours11BLASTNIslandViewer 1371924.gbk
51934818195721622399Island text1.6518731.393620.2857Neighbours116BLASTN+IslandViewer 1934818.gbk
62860818*288999929182Island text1.886434.964230.628Neighbours11BLASTN+IslandViewer 2860818.gbk