Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008751: Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome

NCBI: NC_008751

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1607209*63021323005Island text1.6456826.191639.9135Neighbours11BLASTN+607209.gbk
21043269108607442806Island text2.1748132.756727.2481Neighbours11BLASTN+IslandViewer 1043269.gbk
31431905*145566423760Island text2.2867730.792136.7082Neighbours11BLASTN+1431905.gbk
41736512*175726720756Island text1.908424.379921.4236Neighbours11BLASTN+IslandViewer 1736512.gbk
51762562178759925038Island text2.3933431.81329.1725Neighbours11BLASTN+IslandViewer 1762562.gbk
61851358*187328321926Island text1.7750826.632433.5625Neighbours11BLASTN1851358.gbk
72060391*207813917749Island text1.5363424.036424.6193Neighbours11BLASTN2060391.gbk
82774000279735623357Island text2.8151433.893752.5812Neighbours11BLASTN+IslandViewer 2774000.gbk
92988235301490126667Island text3.7994933.927848.4312Neighbours14BLASTN+IslandViewer 2988235.gbk
103214000323173517736Island text1.647324.170136.7219Neighbours11BLASTN+IslandViewer 3214000.gbk