Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008601: Francisella tularensis subsp. novicida U112, complete genome

NCBI: NC_008601

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: Avirulent species. Francisella novicida is closely related to Francisella tularensis, the causative agent for tularemia but is nonvirulent. This organism, however may cause disease in immunocompromised individuals. They do however cause a disease in mice that is very similar to tularemia. This strain was isolated from water in Utah, USA in 1950. Francisella tularensis is a non-motile, aerobic, rod-shaped Gram-negative bacterium and is the causative agent of tularemia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1168063*19287624814Island text1.4556117.619223.0783Neighbours21BLASTN168063.gbk
2246583*27938032798Island text1.82122.718538.1167Neighbours21BLASTN246583.gbk
3631504*65482423321Island text1.5470315.865226.3491Neighbours21BLASTN+631504.gbk
4753221*78474431524Island text1.6826721.486232.4613Neighbours21BLASTN+753221.gbk
51094041*111586721827Island text1.7233617.787424.8435Neighbours21BLASTN+1094041.gbk
61151653*117409922447Island text1.4664918.093428.3774Neighbours21BLASTN+1151653.gbk
71404933*142455519623Island text1.6449916.959525.0213Neighbours21BLASTN+1404933.gbk
81518136153737119236Island text1.5144618.59822.5484Neighbours21BLASTN1518136.gbk
91560482*160300942528Island text1.6982718.23828.8801Neighbours21BLASTN+1560482.gbk
101658454*167712618673Island text1.6251317.517328.2535Neighbours21BLASTN1658454.gbk
111733940*179060556666Island text1.7658418.49628.0436Neighbours21BLASTN+1733940.gbk
121811327183241021084Island text1.759918.15830.2403Neighbours21BLASTN1811327.gbk