Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008345: Shewanella frigidimarina NCIMB 400, complete genome

NCBI: NC_008345

Host Lineage: Shewanella frigidimarina; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from the North Sea near Aberdeen, United Kingdom. Iron-reducing marine bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella frigidimarina is an iron-reducing marine bacterium. This organism have been isolated from seawater, sea ice, and marine algae.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
12717945274112723183Island text1.4262530.538739.2922Neighbours21BLASTN+2717945.gbk
23199965322606326099Island text2.0270725.069929.1814Neighbours21BLASTN3199965.gbk
33287000330729220293Island text1.6946433.91445.1923Neighbours21BLASTNIslandViewer 3287000.gbk
43394154*341832224169Island text1.7094927.283846.0577Neighbours21BLASTN3394154.gbk
53756977377563418658Island text2.3879424.84518.2787Neighbours21BLASTN+3756977.gbk
64107847413795830112Island text2.0865840.859927.538NeighboursBLASTN+IslandViewer 4107847.gbk