Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008321: Shewanella sp. MR-4, complete genome

NCBI: NC_008321

Host Lineage: Shewanella; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Black Sea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
145881148011921309Island text1.8072931.583639.2287Neighbours42BLASTN458811.gbk
297750099979522296Island text2.2448333.712925.8716Neighbours42BLASTN+IslandViewer 977500.gbk
31523323*156037837056Island text3.2656634.60133.821Neighbours21BLASTNIslandViewer 1523323.gbk
41636148*165976723620Island text2.0973633.289526.5733Neighbours42BLASTNIslandViewer 1636148.gbk
51993541*201934825808Island text2.3629934.974324.7007Neighbours21BLASTN+IslandViewer 1993541.gbk
62190000221007020071Island text1.5129430.727127.214Neighbours42BLASTNIslandViewer 2190000.gbk
72569315*258864019326Island text1.675230.403434.048Neighbours41BLASTN2569315.gbk
82649781268071830938Island text2.0980432.902518.9549Neighbours21BLASTN+IslandViewer 2649781.gbk
92922000294409922100Island text1.8312933.171828.3281NeighboursBLASTN+IslandViewer 2922000.gbk
103189974321250322530Island text1.531229.945940.7906Neighbours42BLASTN+3189974.gbk
113232000325409922100Island text1.4392730.733231.3924Neighbours42BLASTN3232000.gbk
123512471353058118111Island text1.9230.079630.9538Neighbours21BLASTN3512471.gbk
133815940*385514239203Island text2.8724134.673920.6455Neighbours21BLASTN+IslandViewer 3815940.gbk
143964414398859924186Island text2.5724736.155136.0545Neighbours42BLASTN3964414.gbk
154631866465846026595Island text2.1350832.827531.0477Neighbours42BLASTN4631866.gbk