Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008313: Ralstonia eutropha H16 chromosome 1, complete sequence

NCBI: NC_008313

Host Lineage: Cupriavidus necator; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain (ATCC 17699; H16), formerly Alcaligenes eutrophus was originally isolated from sludge. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation. Other strains have been studied for their ability to produce polyhydroxybutyrates which have industrial application. Another strain is able to attack other bacteria and fungi when nutrients in the soil are low.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113975239752Island text2.138121.815423.3325Neighbours11BLASTN+IslandViewer 1.gbk
269169271552323832Island text1.6088120.659828.2929Neighbours11BLASTNIslandViewer 691692.gbk
388624891786931622Island text3.2007628.567222.741Neighbours11BLASTN+IslandViewer 886248.gbk
495963898356423927Island text1.7384922.628322.7599Neighbours11BLASTN+IslandViewer 959638.gbk
51956500197559919100Island text1.7126417.243412.6279Neighbours11BLASTNIslandViewer 1956500.gbk
61991000200925118252Island text1.5030221.789920.6481Neighbours11BLASTN+IslandViewer 1991000.gbk
72142397216633723941Island text1.753122.657520.7668Neighbours11BLASTNIslandViewer 2142397.gbk
82629281*264709917819Island text1.7843117.281718.2604Neighbours11BLASTNIslandViewer 2629281.gbk
92685531*270846622936Island text1.7987317.670615.9985Neighbours11BLASTN+IslandViewer 2685531.gbk
103112440314759935160Island text1.9514621.818826.4697Neighbours11BLASTN+IslandViewer 3112440.gbk
113456741348341526675Island text1.6819916.868317.7062Neighbours11BLASTN+IslandViewer 3456741.gbk