Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007954: Shewanella denitrificans OS217, complete genome

NCBI: NC_007954

Host Lineage: Shewanella denitrificans; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from the Gotland Deep, an anoxic basin in the central Baltic Sea in 1986 from a depth of 120-130 m. Denitrifying marine bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella denitrificans is a vigorous denitrifier, able to convert nitrite and nitrate to nitrogen. This organism has been isolated from seawater and may play a significant role in nitrogen cycling in marine environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113841016136622957Island text1.9811127.854924.1569Neighbours21BLASTN138410.gbk
233479536212727333Island text2.1256130.425417.0045Neighbours21BLASTN+IslandViewer 334795.gbk
31324062*135232928268Island text1.9187530.701424.749Neighbours21BLASTN+IslandViewer 1324062.gbk
41494291151786023570Island text2.1254428.756424.9239Neighbours21BLASTN1494291.gbk
51823085*184470821624Island text1.9048627.750113.4212Neighbours21BLASTN+IslandViewer 1823085.gbk
62440000*246325523256Island text1.9784324.419416.6646Neighbours21BLASTN+2440000.gbk
73171081*321159940519Island text3.425932.727921.3804Neighbours21BLASTNIslandViewer 3171081.gbk
83887488390825720770Island text1.5201528.744449.1808Neighbours21BLASTN+IslandViewer 3887488.gbk