Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007794: Novosphingobium aromaticivorans DSM 12444, complete genome

NCBI: NC_007794

Host Lineage: Novosphingobium aromaticivorans; Novosphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: This strain, also known as F199, was isolated from a sample obtained at a depth of 410 m from a borehole sample that was drilled at the Savannah River Site in South Carolina, USA. Aromatic hydrocarbon-degrading bacterium. This organism is unusual in that it has glycosphingolipid in the cell envelope instead of the lipopolysaccharide found in most other gram negative organisms. It is typically isolated from a wide range of environmental sites.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1262402*29308630685Island text1.8467523.473724.5932Neighbours11BLASTN+IslandViewer 262402.gbk
256162358520423582Island text1.5735619.541122.0825Neighbours11BLASTNIslandViewer 561623.gbk
31504449153289128443Island text1.5825117.531219.7039Neighbours11BLASTN+IslandViewer 1504449.gbk
41553000157259919600Island text1.5218318.872614.3751Neighbours11BLASTN+IslandViewer 1553000.gbk
52304768232593121164Island text1.552220.824222.1505Neighbours11BLASTN+IslandViewer 2304768.gbk
62839239*287591536677Island text3.7977231.988143.276Neighbours11BLASTN+2839239.gbk
73218729*324230423576Island text1.5773117.311319.5468Neighbours11BLASTN+3218729.gbk