Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007348: Ralstonia eutropha JMP134 chromosome 2, complete sequence

NCBI: NC_007348

Host Lineage: Cupriavidus pinatubonensis; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is found in both soil and water and has great potential for use in bioremediation as it is capable of degrading a large list of pollutants including chlorinated aromatic compounds. The bacterium can utilize hydrogen, carbon dioxide, as well as organic compounds for growth and is a model organism for hydrogen oxidation as it can grow on hydrogen as the sole energy source. It was originally isolated due to its ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid, which is due to the degradative functions being encoded on a plasmid (pJP4). Metabolically versatile bacterium. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
175269277745124760Island text1.5825920.672318.4653Neighbours11BLASTN+752692.gbk
21903937192592521989Island text1.5241917.616722.7725Neighbours11BLASTN+IslandViewer 1903937.gbk
32011957203523223276Island text1.7809722.248422.9809Neighbours11BLASTNIslandViewer PAI DB2011957.gbk
42115152216024045089Island text1.6232720.325624.9612Neighbours11BLASTN+IslandViewer 2115152.gbk
52519447254952230076Island text1.8167921.349120.1431Neighbours11BLASTN+IslandViewer 2519447.gbk
62558500*258100922510Island text1.5765721.408416.8946Neighbours11BLASTN+IslandViewer 2558500.gbk