Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007298: Dechloromonas aromatica RCB, complete genome

NCBI: NC_007298

Host Lineage: Dechloromonas aromatica; Dechloromonas; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: This strain was enriched as a hydrocarbon-oxidizing chlorate-reducer from the Potomac River, Maryland, USA. This organism is the first one to have the capability of benzene oxidation in pure anaerobic culture by coupling it to nitrate reduction which is of importance due to the anaerobic environments often found in bioremediation projects. It can reduce perchlorate and chlorate to chloride. This organism may be used for bioremediation as it can oxidize aromatic hydrocarbon compounds, including benzene, in the absence of oxygen. Benzene is an important pollutant, and is used in many manufacturing processes and is a component of diesel fuel.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1219783*24447124689Island text1.6656328.131735.3728Neighbours11BLASTNIslandViewer 219783.gbk
2750361*77159921239Island text1.534827.58931.0026Neighbours11BLASTNIslandViewer 750361.gbk
377872382009941377Island text1.6435527.815840.9228Neighbours11BLASTN+IslandViewer 778723.gbk
41029841105396624126Island text1.4725627.942647.6367Neighbours11BLASTN1029841.gbk
51129889*115580225914Island text1.5078327.346825.4233Neighbours11BLASTN+IslandViewer 1129889.gbk
61334876136112026245Island text1.8220229.398735.4022Neighbours11BLASTNIslandViewer 1334876.gbk
71418500*146207243573Island text1.6807229.130525.9268Neighbours11BLASTN+IslandViewer 1418500.gbk
81499344151862519282Island text1.5282225.583731.3284Neighbours11BLASTNIslandViewer 1499344.gbk
91666480168561319134Island text1.5157125.376928.6454Neighbours11BLASTN+1666480.gbk
101721425174188220458Island text1.5202127.110929.341Neighbours11BLASTN+1721425.gbk
111759881180860548725Island text1.7405527.356121.6795Neighbours11BLASTN+IslandViewer 1759881.gbk
121824335*184843524101Island text2.0381228.911831.3298Neighbours11BLASTN+IslandViewer 1824335.gbk
132170181*219259922419Island text1.5884228.646830.6353Neighbours11BLASTN2170181.gbk
142568851261322644376Island text1.8507230.645130.6549Neighbours11BLASTN+IslandViewer 2568851.gbk
152689731*272716337433Island text1.9434134.778832.8196Neighbours11BLASTN+IslandViewer 2689731.gbk
162769525*280350733983Island text2.3086831.797427.8071Neighbours11BLASTN+IslandViewer 2769525.gbk
172856104*289461138508Island text1.6822226.250430.9339Neighbours11BLASTNIslandViewer 2856104.gbk
182947200*297064623447Island text1.5702724.896638.1776Neighbours11BLASTN+IslandViewer 2947200.gbk
193271071*329537724307Island text1.8443331.956242.3068Neighbours11BLASTNIslandViewer 3271071.gbk
203764048*379032226275Island text1.6751732.734427.7252Neighbours11BLASTN+IslandViewer 3764048.gbk