Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006958: Corynebacterium glutamicum ATCC 13032, complete genome

NCBI: NC_006958

Host Lineage: Corynebacterium glutamicum; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causes bovine brucellosis. They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is a well-studied soil bacterium of considerable importance in biotechnology, in particular for the fermentative production of L-amino acids for food and fodder industry. The name was originaly given for this species for its ability to produce significant quantities (>100 g per liter) of glutamic acid (glutamate), an important food enhancer that has a meaty taste and flavor. Currently used commercially to produce glutamate and other amino acids (L-lysine) and compounds. The first strain of the species was isolated in 1957 by S. Kinoshita and colleagues while searching for an efficient glutamate-producer.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117969020324523556Island text1.4267834.022429.9184Neighbours11BLASTN+179690.gbk
235976040443244673Island text2.566944.65230.9133Neighbours13BLASTN+IslandViewer 359760.gbk
362803565607628042Island text1.9065837.212133.991Neighbours13BLASTN+IslandViewer 628035.gbk
474850077100922510Island text1.5888133.812633.4755Neighbours13BLASTN+748500.gbk
582808984892220834Island text1.6457232.997941.6007NeighboursBLASTNIslandViewer 828089.gbk
61396264141438318120Island text1.8122332.833833.5059Neighbours115BLASTN+IslandViewer 1396264.gbk
71771796*179765625861Island text1.5366532.423446.9424Neighbours115BLASTN+IslandViewer 1771796.gbk
81819944*186220242259Island text1.6468141.999245.5352Neighbours115BLASTN+IslandViewer 1819944.gbk
91872849189317920331Island text1.5064634.055842.2981Neighbours115BLASTN+IslandViewer 1872849.gbk
101904582*196447859897Island text2.2257842.805443.6605Neighbours115BLASTN+IslandViewer 1904582.gbk
112214893*223820523313Island text1.4493238.314727.2019Neighbours13BLASTN+IslandViewer 2214893.gbk
122911711*293364721937Island text1.7605638.296423.0167Neighbours13BLASTN+IslandViewer 2911711.gbk
133240019*326059920581Island text1.5004734.490533.5729Neighbours13BLASTN+3240019.gbk