Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006448: Streptococcus thermophilus LMG 18311, complete genome

NCBI: NC_006448

Host Lineage: Streptococcus thermophilus; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from commercial yogurt in 1974 in the United Kingdom. Lactic acid producing bacterium used in cheese and yogert production. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is a lactic acid bacteria often used as a starter culture for fermented dairy products including yogurt and cheese.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
15046*3135826313Island text3.3255529.87151.419Neighbours21BLASTN+IslandViewer 5046.gbk
259654*8486525212Island text2.6506628.881546.5348Neighbours21BLASTN+59654.gbk
3121435*14257121137Island text2.5201126.59745.6636Neighbours344BLASTN+121435.gbk
4351998*37421022213Island text2.8935528.128649.0979Neighbours21BLASTN+351998.gbk
5465656*48850822853Island text1.4262126.98244.7923Neighbours21BLASTN+465656.gbk
695783098081222983Island text3.3612823.863118.6198Neighbours21BLASTN+IslandViewer 957830.gbk
71451729*147414422416Island text1.4246926.185646.1567Neighbours21BLASTN+IslandViewer 1451729.gbk
81568000*159009922100Island text1.6103423.750638.1106Neighbours21BLASTN+1568000.gbk
91604627*162285318227Island text2.0595527.26645.3396Neighbours21BLASTN+1604627.gbk
101709523*173288623364Island text3.8064324.36479.99513Neighbours21BLASTN+IslandViewer 1709523.gbk