Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006351: Burkholderia pseudomallei K96243 chromosome 2, complete sequence

NCBI: NC_006351

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was a clinical isolate from Thailand. The genome of this organism carries many genomic islands as compared to the related organism B. mallei, suggesting extensive horizontal transfer. Opportunistic pathogen. This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17300010112828129Island text2.6040425.294716.5541Neighbours11BLASTN+IslandViewer 73000.gbk
210150011980118302Island text1.5181716.056725.7705Neighbours11BLASTN PAI DB101500.gbk
314278817240329616Island text2.1913424.302629.8877Neighbours11BLASTN+ PAI DB142788.gbk
452050056649745998Island text2.9985226.518617.7034Neighbours11BLASTN+IslandViewer 520500.gbk
588165591405032396Island text3.2934433.05326.5881Neighbours11BLASTN+IslandViewer 881655.gbk
61631760165459922840Island text1.6773624.728116.6397Neighbours11BLASTN+IslandViewer 1631760.gbk
71886475191147525001Island text1.8217227.017826.5901Neighbours11BLASTN PAI DB1886475.gbk
82398403*241919020788Island text1.5398618.283920.1182Neighbours11BLASTN+2398403.gbk
92759708280620746500Island text1.6737521.413423.2877Neighbours11BLASTN+IslandViewer 2759708.gbk
103159630*318599926370Island text1.4797221.516328.7063Neighbours11BLASTN+3159630.gbk