Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005070: Synechococcus sp. WH 8102, complete genome

NCBI: NC_005070

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a motile strain that can be grown in both natural and artificial seawater liquid media. It was isolated from the tropical Atlantic ocean in 1981. The genome contains evidence of many phage integration events and analysis of the metabolic pathways show that this organism is capable of a more nutritionally diverse lifestyle than that of Prochlorococcus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1334952*38059945648Island text2.4824836.563629.1749Neighbours11BLASTN+IslandViewer 334952.gbk
241926147386554605Island text10.747760.207134.957Neighbours21BLASTN+IslandViewer PAI DB419261.gbk
361744864381626369Island text4.0842550.847836.3568Neighbours11BLASTN+IslandViewer 617448.gbk
4837567*86362826062Island text2.5706542.898523.0242Neighbours11BLASTN+IslandViewer 837567.gbk
5904751*96751962769Island text3.9893957.14942.9412BLASTN+IslandViewer 904751.gbk
61088808110731218505Island text1.8319834.913126.1847Neighbours11BLASTN+1088808.gbk
71144777*118894644170Island text2.9260343.739526.3324Neighbours11BLASTN+IslandViewer 1144777.gbk
81331741*135375522015Island text2.4356440.363619.7195Neighbours13BLASTN+ PAI DB1331741.gbk
91486496152459938104Island text2.830545.966429.9342Neighbours13BLASTN+IslandViewer 1486496.gbk
101588419*161715628738Island text3.2467747.020922.8095Neighbours13BLASTN+IslandViewer 1588419.gbk
111837051*185722820178Island text2.3781438.050223.5437Neighbours13BLASTN+IslandViewer 1837051.gbk
121898612192918630575Island text2.8251943.716430.9194Neighbours13BLASTNIslandViewer 1898612.gbk
131978000*199991521916Island text2.5610841.147920.1826Neighbours13BLASTN+IslandViewer 1978000.gbk
142133380*215646123082Island text3.3268942.494841.9004Neighbours11BLASTN+IslandViewer 2133380.gbk
152181000220770426705Island text2.92842.758433.7481Neighbours13IslandViewer 2181000.gbk
162308363*233088122519Island text2.7848842.205723.8385Neighbours11BLASTN+IslandViewer 2308363.gbk
172374850*240528730438Island text9.2443157.434631.4469Neighbours13BLASTN+IslandViewer 2374850.gbk