Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_004459: Vibrio vulnificus CMCP6 chromosome I, complete sequence

NCBI: NC_004459

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Pathogen in immunocompromised patients. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111690216902Island text1.7596232.719634.8469Neighbours21BLASTN+1.gbk
2349500*40074451245Island text2.3617134.459921.0486Neighbours21BLASTN+IslandViewer 349500.gbk
3767127*78659919473Island text1.5072832.082952.8749Neighbours21BLASTNIslandViewer 767127.gbk
41679335*170642427090Island text1.7753635.787430.0552Neighbours42BLASTN+IslandViewer 1679335.gbk
51794540*182011925580Island text1.5273131.614824.8873Neighbours42BLASTN1794540.gbk
62025436205524629811Island text2.5929335.362120.9252Neighbours21BLASTN+IslandViewer 2025436.gbk
72443000*2588599145600Island text1.6626431.636.3003Neighbours21BLASTN+IslandViewer 2443000.gbk
83243987327990435918Island text2.4691533.284516.9Neighbours21BLASTN+IslandViewer 3243987.gbk