Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_004368: Streptococcus agalactiae NEM316, complete genome

NCBI: NC_004368

Host Lineage: Streptococcus agalactiae; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a serotype III strain isolated from a case of fatal septicemia. Type III is responsible for 80% of neonatal GBS (group B streptococcal) meningitis. Causes meningitis and sepsis in newborns.Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is the leading cause of meningitis and sepsis in newborns. Additionally this organism is the cause of serious infections in immunocompromised adults. Able to asymptomatically colonize human skin and mucous membranes. This organism is also implicated in cases of mastitis in cows.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1533077491321607Island text1.6382322.650926.292NeighboursBLASTN53307.gbk
240031842685726540Island text1.5720120.67431.4435NeighboursBLASTNIslandViewer 400318.gbk
372638576228035896Island text1.5539420.469131.1822NeighboursBLASTNIslandViewer 726385.gbk
41009866104830038435Island text1.5433921.246130.4477NeighboursBLASTNIslandViewer 1009866.gbk
51160535120497144437Island text1.7094122.221734.7688NeighboursBLASTNIslandViewer 1160535.gbk
61386746141568128936Island text1.5782821.814732.791Neighbours21BLASTNIslandViewer 1386746.gbk