Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003454: Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete

NCBI: NC_003454

Host Lineage: Fusobacterium nucleatum; Fusobacterium; Fusobacteriaceae; Fusobacteriales; Fusobacteria; Bacteria

General Information: Normal oral and gastrointestinal bacterium. This genus contains mostly obligately anaerobic bacilli. Many of the isolates are spindle-shaped, or fusiform. This organism belongs to the normal microflora of the human oral and gastrointestinal tracts. It is a very long and slender spindle-shaped bacillus with sharply pointed ends that is characterized by the ability to invade soft tissues. It acts as a bridge between early and late colonizers of the tooth surface, and exerts synergism with other bacteria in mixed infections. It is most frequently associated with periodontal diseases, as well as with some invasive human infections of the head and neck, chest, lung, liver and abdomen, and some anginas. One of the major amino acid and sugar fermentation pathways in Fusobacterium nucleatum produces butyric and acetic acids.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124178*4266218485Island text1.5446917.560417.9529Neighbours21BLASTN+24178.gbk
263500*10726843769Island text2.1096319.372932.3586Neighbours21BLASTN+63500.gbk
3128000*15096822969Island text3.7091519.497232.4738Neighbours21BLASTN+128000.gbk
4249304*26978820485Island text2.5390518.358934.2417Neighbours21BLASTN249304.gbk
529294231179718856Island text3.7135217.430736.1615Neighbours21BLASTN+292942.gbk
633934536227222928Island text1.6369817.448923.3037Neighbours21BLASTN+339345.gbk
737041839319422777Island text2.4834620.579336.3895Neighbours21BLASTN+IslandViewer 370418.gbk
8618290*63831520026Island text3.0846918.129930.7467Neighbours21BLASTN618290.gbk
9677699*70224424546Island text1.8631416.901825.9349Neighbours21BLASTN+677699.gbk
1075872677852519800Island text4.1011118.466735.8418Neighbours21BLASTN+IslandViewer 758726.gbk
1182280484109918296Island text2.3790218.591930.3447Neighbours21BLASTN822804.gbk
1286536888609920732Island text3.5291317.767133.3384Neighbours21BLASTN+865368.gbk
13983681*100260518925Island text1.8314217.032526.9034Neighbours21BLASTN+983681.gbk
141346500*136586219363Island text3.3188917.681231.936Neighbours21BLASTN+1346500.gbk
151889529191329623768Island text2.4597116.129624.7716Neighbours21BLASTN+1889529.gbk
162080705210460123897Island text1.67618.097722.7783Neighbours21BLASTN+2080705.gbk
172113464214145027987Island text2.0397622.20833.4579Neighbours21BLASTN+2113464.gbk