Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002976: Staphylococcus epidermidis RP62A, complete genome

NCBI: NC_002976

Host Lineage: Staphylococcus epidermidis; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a strongly adherent, slime-producing, pathogenic strain isolated from a patient with intravascular catheter-associated sepsis. Common skin bacterium. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is the most prevalent and persistent Staphylococcus species on human skin. Has emerged as a common cause of nosocomial (hospital-acquired) infections, including catheter-associated infections and septicemia, particularly in immunocompromised patients. Highly resistant to many antibiotics including penicillins and cephalosporins.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1177282*19706919788Island text1.8672818.302129.4311Neighbours21BLASTN177282.gbk
263879966264823850Island text1.8709217.956633.5364Neighbours21BLASTN+638799.gbk
3707827*73065222826Island text1.5008619.856528.4444Neighbours21BLASTN707827.gbk
41021490105865837169Island text2.0922722.156239.9967Neighbours21BLASTN1021490.gbk
51361364*138809126728Island text2.3606921.065339.2527Neighbours21BLASTN+1361364.gbk
61540794156113820345Island text2.3454618.105537.2366Neighbours21BLASTN+1540794.gbk
71655851168185026000Island text1.7862219.836131.3265Neighbours21+IslandViewer 1655851.gbk
81844901*187401629116Island text1.6555721.314929.7412Neighbours21BLASTN+1844901.gbk
92434880246168326804Island text1.6776123.426645.3429Neighbours21BLASTN2434880.gbk
102580485*260359923115Island text1.8119319.135828.7378Neighbours21BLASTN+IslandViewer 2580485.gbk