Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002953: Staphylococcus aureus subsp. aureus MSSA476, complete genome

NCBI: NC_002953

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a hyper-virulent community acquired methicillin-susceptible (MSSA) strain isolated in the United Kingdom. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. Continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115416*4259927184Island text1.6394820.103131.3843Neighbours21BLASTNIslandViewer 15416.gbk
230322332688823666Island text1.6968817.068935.7595Neighbours21BLASTN+303223.gbk
3561740*58116719428Island text1.5421920.464531.0066Neighbours21BLASTN561740.gbk
458843761403425598Island text1.6973223.251339.7994Neighbours21BLASTN588437.gbk
5998944101716318220Island text2.0284419.339734.6632Neighbours21BLASTN+998944.gbk
61464693150259937907Island text1.7451728.96744.2793Neighbours21BLASTN+1464693.gbk
71819411*184209922689Island text1.7556520.623833.7942Neighbours21BLASTN1819411.gbk
82032278205108318806Island text2.1422319.318532.8237Neighbours21BLASTN2032278.gbk
92157781*218009922319Island text1.5398318.971930.8564Neighbours21BLASTN2157781.gbk
102282236*231132529090Island text1.7005824.296133.2768Neighbours21BLASTN+2282236.gbk
112435667245828222616Island text1.6985419.555829.4798Neighbours21BLASTN+2435667.gbk
122541264256306121798Island text1.7429520.774630.9701Neighbours21BLASTN2541264.gbk
132773000279475321754Island text2.3525719.804837.1665Neighbours21BLASTN+2773000.gbk