Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_000909: Methanocaldococcus jannaschii DSM 2661, complete genome

NCBI: NC_000909

Host Lineage: Methanocaldococcus jannaschii; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Methane-producing thermophilic archeon. Isolated from a deep-sea hydrothermal vent in the east Pacific Rise in 1982. This organism is an obligately anaerobic methane-producing archeon and was the first representative of the archaeal domain to be completely sequenced. The cells require a pH of 5.2-7 with 1.0-5.0% NaCl, optimal conditions are pH 6.0 and 3% NaCl. Fixes carbon dioxide to methane as its primary energy-producing biochemical pathway.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1677299075223024Island text1.5793419.36131.1366Neighbours21BLASTN+67729.gbk
2201000*22113320134Island text1.6867622.271232.6004Neighbours21BLASTN+201000.gbk
330475432759922846Island text1.6768820.238932.128Neighbours21BLASTN304754.gbk
4404961*42810423144Island text2.4847622.486741.6621Neighbours21BLASTN404961.gbk
5446364*46544119078Island text2.6016718.935431.5203Neighbours21BLASTN446364.gbk
6467607*49036422758Island text2.1628917.886734.0663Neighbours21BLASTN467607.gbk
7597692*62002322332Island text1.9152920.298532.6897Neighbours21BLASTN+597692.gbk
865790467588717984Island text1.8803318.637530.9782Neighbours21BLASTN657904.gbk
976285978958726729Island text1.8373523.481431.9427Neighbours21BLASTN762859.gbk
10858840*88123922400Island text1.6422218.652331.3071Neighbours21BLASTN858840.gbk
11963984*98948725504Island text2.0814220.468836.6876Neighbours21BLASTN+963984.gbk
121123161*114460521445Island text1.8628320.900528.9225Neighbours21BLASTN1123161.gbk
131408276142700518730Island text1.7988919.074332.7415Neighbours21BLASTN1408276.gbk
141517461*154009922639Island text1.7692819.269833.6277Neighbours21BLASTN+1517461.gbk
151615927163825922333Island text1.717616.23631.0208Neighbours21BLASTNIslandViewer 1615927.gbk