Pre_GI Gene

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Host: NC_000909 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_000909:963984 Methanocaldococcus jannaschii DSM 2661, complete genome

Host Lineage: Methanocaldococcus jannaschii; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Methane-producing thermophilic archeon. Isolated from a deep-sea hydrothermal vent in the east Pacific Rise in 1982. This organism is an obligately anaerobic methane-producing archeon and was the first representative of the archaeal domain to be completely sequenced. The cells require a pH of 5.2-7 with 1.0-5.0% NaCl, optimal conditions are pH 6.0 and 3% NaCl. Fixes carbon dioxide to methane as its primary energy-producing biochemical pathway.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9639849650841101hypothetical proteinBLASTP
965086966039954magnesium and cobalt transport protein corAQuickGO ontologyBLASTP
966049966312264signal recognition particle subunit SRP19QuickGO ontologyBLASTP
966335967168834F420-dependent methylenetetrahydromethanopterin dehydrogenaseQuickGO ontologyBLASTP
967577968278702hypothetical proteinBLASTP
9683419695551215tryptophan synthase subunit betaQuickGO ontologyBLASTP
969732970586855tryptophan synthase alpha subunit trpAQuickGO ontologyBLASTP
970761970997237DNA-directed RNA polymerase subunit H rpoHQuickGO ontologyBLASTP
9710059725011497DNA-directed RNA polymerase subunit B rpoB2QuickGO ontologyBLASTP
9725879744971911DNA-directed RNA polymerase subunit B rpoB1QuickGO ontologyBLASTP
9746069786314026DNA-directed RNA polymerase subunit alphaQuickGO ontologyBLASTP
9787069812852580DNA-directed RNA polymerase subunit AQuickGO ontologyBLASTP
98163298196433350S ribosomal protein L30QuickGO ontologyBLASTP
981964982515552transcription elongation factor NusAQuickGO ontologyBLASTP
98265798310344730S ribosomal protein S12QuickGO ontologyBLASTP
98316198373657630S ribosomal protein S7QuickGO ontologyBLASTP
9838479860272181elongation factor EF-2QuickGO ontologyBLASTP
986884987369486hypothetical proteinBLASTP
987437987970534hypothetical proteinBLASTP
9879469894871542nodulation proteinQuickGO ontologyBLASTP