Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

CP002797: Escherichia coli NA114, complete genome

NCBI: CP002797

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11591000160930018301Island text1.6543128.524223.2062Neighbours41BLASTN1591000.gbk
21960000*198508025081Island text1.4854235.402544.2746BLASTN+1960000.gbk
32025330205156426235Island text1.5860534.745928.0457Neighbours11BLASTN+2025330.gbk
42062006*208330121296Island text1.5752931.762430.229Neighbours41BLASTN+2062006.gbk
52472908249359920692Island text1.5053129.185922.4327Neighbours41BLASTN+2472908.gbk
64411763*444042528663Island text1.6173932.033723.455Neighbours41BLASTN+4411763.gbk
74603787*464340739621Island text1.5456530.330925.5766Neighbours41BLASTN+4603787.gbk
84656327468071624390Island text1.5696426.836125.2101Neighbours41BLASTN+4656327.gbk
94775780479609920320Island text1.5306637.031927.5338Neighbours41BLASTN+4775780.gbk
104812799*483159918801Island text1.5231937.025845.9435Neighbours41BLASTN+4812799.gbk