Pre_GI Gene

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Host: NC_021182 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_021182:4367736 Clostridium pasteurianum BC1, complete genome

Host Lineage: Clostridium pasteurianum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Soil; Isolation: Coal-cleaning residues; Temp: Mesophile; Temp: 30C. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium pasteurianum was first isolated from soil by the Russian microbiologist Sergey Winogradsky. This organism is able to fix nitrogen and oxidize hydrogen into protons. The genes involved in nitrogen fixation and hydrogen oxidation have been extensively studied in this organism.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
436773643691631428Phage portal protein SPP1 Gp6QuickGO ontologyBLASTP
436918043709551776hypothetical proteinBLASTP
43715794372016438hypothetical protein
43722244372838615hypothetical proteinBLASTP
43731464373559414resolvase family proteinQuickGO ontologyBLASTP
43738524374295444DNA-directed RNA polymerase specialized sigma subunitQuickGO ontologyBLASTP
43743004374458159hypothetical protein
43745594374723165hypothetical proteinBLASTP
437503443776402607DNA primaseQuickGO ontologyBLASTP
43777154377840126hypothetical proteinBLASTP
43778334378420588hypothetical proteinBLASTP
43785194378692174hypothetical protein
43787714379238468single stranded DNA-binding proteinQuickGO ontologyBLASTP
43792394379856618putative HD superfamily hydrolaseQuickGO ontologyBLASTP
43798534380137285hypothetical protein
43801494381105957phage recombination protein BetQuickGO ontologyBLASTP
438110543827841680hypothetical proteinBLASTP
43828784383057180hypothetical protein
43830724383620549RNA polymerase sigma factor sigma-70 familyQuickGO ontologyBLASTP
43836264383832207hypothetical proteinBLASTP
43838254384022198hypothetical proteinBLASTP
43840064384272267hypothetical protein
43842724384634363hypothetical protein
43848654385074210hypothetical proteinBLASTP
43851534385410258hypothetical proteinBLASTP
43854044385622219Helix-turn-helix proteinQuickGO ontologyBLASTP
43858124386150339putative transcriptional regulatorQuickGO ontology
438621143874551245site-specific recombinase XerDQuickGO ontologyBLASTP
43877614388141381hypothetical proteinBLASTP
43883304389232903ABC-type metal ion transport system periplasmic componentsurface adhesinQuickGO ontologyBLASTP
438958343908271245HD-GYP domain-containing proteinQuickGO ontologyBLASTP