Pre_GI Gene

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Host: NC_000117 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_000117:350487 Chlamydia trachomatis D/UW-3/CX, complete genome

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Isolated from the cervix of an asymptomatic female. Opportunistic pathogen. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. This species causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes. This is a trachoma biovar, serovar D strain.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3504873546774191DNA-directed RNA polymerase beta subunitQuickGO ontologyBLASTP
3547023584603759DNA-directed RNA polymerase beta subunitQuickGO ontologyBLASTP
35882135921339350S ribosomal protein L7L12QuickGO ontologyBLASTP
35924535976351950S ribosomal protein L10QuickGO ontologyBLASTP
35978536048369950S ribosomal protein L1QuickGO ontologyBLASTP
36050636093142650S ribosomal protein L11QuickGO ontologyBLASTP
361037361585549transcription antitermination protein NusGQuickGO ontologyBLASTP
361589361837249translocaseQuickGO ontologyBLASTP
36186736193973tRNA-TrpQuickGO ontology
3619803631641185elongation factor TuQuickGO ontologyBLASTP
36321036328172tRNA-ThrQuickGO ontology
363512363733222translation initiation factor IF-1QuickGO ontologyBLASTP
364145365056912hypothetical proteinBLASTP
365053365499447hypothetical proteinBLASTP
3655513672421692hypothetical proteinBLASTP
367229367417189hypothetical proteinBLASTP
367607367789183hypothetical proteinBLASTP
36839636846873tRNA-MetQuickGO ontology
368509369135627N-5-phosphoribosylanthranilate isomeraseQuickGO ontologyBLASTP
369332370156825triosephosphate isomeraseQuickGO ontologyBLASTP
3701703717201551exodeoxyribonuclease VII large subunitQuickGO ontologyBLASTP
371929372201273hypothetical proteinBLASTP
37219837412019231-deoxy-D-xylulose-5-phosphate synthaseQuickGO ontologyBLASTP
3742173756741458pyruvate kinaseQuickGO ontologyBLASTP
3756973810575361excinuclease ABC subunit AQuickGO ontologyBLASTP