Pre_GI Gene

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Host: NC_017368 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017368:852490 Helicobacter pylori F16, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
852490853089600cag pathogenicity island proteinQuickGO ontologyBLASTP
853291854133843cag pathogenicity island proteinQuickGO ontologyBLASTP
854149854796648cag pathogenicity island proteinQuickGO ontologyBLASTP
855066855824759cag pathogenicity island proteinQuickGO ontologyBLASTP
8558298574361608cag pathogenicity island proteinQuickGO ontologyBLASTP
8574888590531566cag pathogenicity island proteinQuickGO ontologyBLASTP
8590688644585391cag island proteinQuickGO ontologyBLASTP
864596865195600cag pathogenicity island proteinQuickGO ontologyBLASTP
865200866192993cag pathogenicity island proteinQuickGO ontologyBLASTP
8662018684472247cag pathogenicity island proteinQuickGO ontologyBLASTP
868755869264510cag island proteinQuickGO ontologyBLASTP
8692748707191446cag pathogenicity island proteinQuickGO ontologyBLASTP
870948871295348cag pathogenicity island proteinQuickGO ontologyBLASTP
871433872278846hypothetical proteinBLASTP
872347873339993hypothetical proteinBLASTP
873336874241906GTP-binding protein EraQuickGO ontologyBLASTP
8742418755721332ATP-dependent protease ATP-binding subunitQuickGO ontologyBLASTP
875572876114543ATP-dependent protease peptidase subunitQuickGO ontologyBLASTP
87611887656745050S ribosomal protein L9QuickGO ontologyBLASTP