Pre_GI Gene

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Host: NC_017366 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017366:535188 Helicobacter pylori F32, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5351885366331446cag pathogenicity island proteinQuickGO ontologyBLASTP
536643537152510cag island proteinQuickGO ontologyBLASTP
5374575397032247cag pathogenicity island proteinQuickGO ontologyBLASTP
539712540704993cag pathogenicity island proteinQuickGO ontologyBLASTP
540709541308600cag pathogenicity island proteinQuickGO ontologyBLASTP
5414455474536009cag pathogenicity island protein Y VirB10-like proteinQuickGO ontologyBLASTP
5474685490331566cag pathogenicity island proteinQuickGO ontologyBLASTP
5490865506931608cag pathogenicity island proteinQuickGO ontologyBLASTP
550698551456759cag pathogenicity island proteinQuickGO ontologyBLASTP
551732552379648cag pathogenicity island proteinQuickGO ontologyBLASTP
552395553237843cag pathogenicity island proteinQuickGO ontologyBLASTP
553434554033600cag pathogenicity island proteinQuickGO ontologyBLASTP
5560545571841131cag pathogenicity island proteinQuickGO ontologyBLASTP