Pre_GI Gene

Some Help

Host: NC_017214 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017214:299637 Bifidobacterium animalis subsp. lactis BB-12 chromosome, complete

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
299637300578942HydrolaseQuickGO ontologyBLASTP
300685301440756hypothetical proteinBLASTP
301443301838396ThioredoxinQuickGO ontologyBLASTP
3021033031971095Membrane-bound transglycosylaseQuickGO ontologyBLASTP
3034693051451677undecaprenyl-phosphate galactose phosphotransferaseQuickGO ontologyBLASTP
305342305797456hypothetical proteinBLASTP
3061043076421539hypothetical proteinBLASTP
3076263086331008glycosyltransferaseQuickGO ontologyBLASTP
3087113106361926hypothetical proteinBLASTP
310744311634891glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
3116483130991452dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
3131743142171044dTDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
314349315314966alpha-L-Rha alpha-13-L-rhamnosyltransferaseQuickGO ontologyBLASTP
3153163167791464Capsular polysaccharide repeat unit transport proteinQuickGO ontologyBLASTP
316793317680888Putative rhamnosyl transferaseQuickGO ontologyBLASTP
3176993187301032glycosyltransferaseQuickGO ontologyBLASTP
3187053200511347hypothetical proteinBLASTP
320048320941894RfbFQuickGO ontologyBLASTP
320954321799846Alpha-13-galactosyltransferaseQuickGO ontologyBLASTP
321723322625903RfbNQuickGO ontologyBLASTP
3227603238751116capsular polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
3237573250041248UDP-glucose 6-dehydrogenaseQuickGO ontologyBLASTP
3251253265611437Oligosaccharide translocase flippaseQuickGO ontologyBLASTP
3266093276311023UDP-galactopyranose mutaseQuickGO ontologyBLASTP
327666328529864RfbFQuickGO ontologyBLASTP
3286233301581536undecaprenyl-phosphate galactose phosphotransferaseQuickGO ontologyBLASTP
330368330478111hypothetical proteinBLASTP
330435330776342hypothetical proteinBLASTP
3308493325731725Multidrug resistance protein BQuickGO ontologyBLASTP
3327003340581359protein MntHQuickGO ontologyBLASTP
3341623349237623-oxoacyl-ACP synthaseQuickGO ontologyBLASTP
335049335924876pyridoxine biosynthesis proteinQuickGO ontologyBLASTP
335951336601651pyridoxine biosynthesis amidotransferaseQuickGO ontologyBLASTP
3369443380801137UDP-glucuronate 4-epimeraseQuickGO ontologyBLASTP
338185338649465Beta-14-glucuronosyltransferase accessory proteinQuickGO ontologyBLASTP
338637339149513beta-D-Glcp beta-14-glucuronosyltransferaseQuickGO ontologyBLASTP
339227340180954RfbFQuickGO ontologyBLASTP
340173341009837RfbFQuickGO ontologyBLASTP
3411953423281134hypothetical proteinBLASTP
3424533463343882Multidrug resistance ABC transporter ATP-binding and permease proteinQuickGO ontologyBLASTP
3462073480961890long-chain-fatty-acid--CoA ligaseQuickGO ontologyBLASTP
3481483495601413Septum formation protein MafQuickGO ontologyBLASTP
349724350290567Protein tyrosine phosphataseQuickGO ontologyBLASTP
3503753522461872hypothetical proteinBLASTP
3522703538171548Chain length regulator capsular polysaccharide biosynthesisQuickGO ontologyBLASTP