Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:1840172 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
18396331840184552hypothetical proteinBLASTP
18401721841059888hypothetical proteinBLASTP
18414361841951516virulence-related outer membrane proteinQuickGO ontologyBLASTP
184229518434641170major facilitator superfamily MFS_1QuickGO ontologyBLASTP
184350318449331431MATE efflux family proteinQuickGO ontologyBLASTP
18453161845852537Rhodanese domain proteinQuickGO ontologyBLASTP
18459181846247330hypothetical proteinBLASTP
18464821846946465transcription activator effector bindingQuickGO ontologyBLASTP
18471061847984879hypothetical protein
18486001848725126hypothetical protein
18491121849981870hypothetical proteinBLASTP
18500601850278219phage transcriptional regulator AlpAQuickGO ontologyBLASTP
185068518518751191integrase family proteinQuickGO ontologyBLASTP
185187218531761305integrase family proteinQuickGO ontologyBLASTP
185316918548541686DNA-binding proteinQuickGO ontologyBLASTP
18548991855315417hypothetical proteinBLASTP
18554151855825411hypothetical proteinBLASTP
18561281857123996hypothetical protein
18574161857925510hypothetical protein
18587141859169456hypothetical protein
18595201859843324hypothetical proteinBLASTP
18598731860247375hypothetical proteinBLASTP
18602831861080798hypothetical proteinBLASTP
186139918627331335Relaxasemobilization nuclease family proteinQuickGO ontologyBLASTP
18627021863139438hypothetical proteinBLASTP
18633481863668321hypothetical protein
186385718649451089hypothetical protein
18653531865628276hypothetical proteinBLASTP
186562518670191395Radical SAM domain proteinQuickGO ontologyBLASTP
186701218681241113Radical SAM domain proteinQuickGO ontologyBLASTP
18681211868777657hypothetical proteinBLASTP
186879918704181620hypothetical proteinBLASTP
18705181870697180hypothetical proteinBLASTP
18706871870800114hypothetical protein
18709411871135195hypothetical proteinBLASTP
18712021871678477hypothetical proteinBLASTP
18719251872821897hypothetical proteinBLASTP
18729771873969993TIR proteinQuickGO ontologyBLASTP
18741391874315177hypothetical protein
18744061874891486type VI secretion system effector Hcp1 familyQuickGO ontologyBLASTP
18752531876137885hypothetical proteinBLASTP
18763581876912555hypothetical protein
18770841877287204hypothetical protein
18772801877921642hypothetical proteinBLASTP
187820518794341230integrase family proteinQuickGO ontologyBLASTP
1879652187972877tRNA-ProQuickGO ontologyBLASTP
187980718815551749sulfataseQuickGO ontologyBLASTP
18815701881800231hypothetical proteinBLASTP
18820181883025100837kDa nucleoid-associated proteinQuickGO ontologyBLASTP
188311218842601149hypothetical proteinBLASTP
18843601884644285ribosomal protein L25QuickGO ontologyBLASTP
188505118868111761type III restriction protein res subunitQuickGO ontologyBLASTP
18868141887053240hypothetical proteinBLASTP
18872781887973696pseudouridine synthaseQuickGO ontologyBLASTP
188801418892041191drug resistance transporter BcrCflA subfamilyQuickGO ontologyBLASTP
18895921889936345hypothetical proteinBLASTP
188997618915921617ABC transporter relatedQuickGO ontologyBLASTP