Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:4460726 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
44604844460729246hypothetical proteinBLASTP
44607264461463738hypothetical proteinBLASTP
44620014462267267hypothetical proteinBLASTP
44624444462815372phage immunity repressor proteinQuickGO ontologyBLASTP
44628124463039228hypothetical proteinBLASTP
44630364463356321hypothetical proteinBLASTP
446337144657042334hypothetical proteinBLASTP
44659724466121150hypothetical proteinBLASTP
44662574466415159hypothetical proteinBLASTP
44679344468431498fimbrial structural proteinQuickGO ontologyBLASTP
44685534469305753fimbrial chaperone proteinQuickGO ontologyBLASTP
446931044717542445outer membrane fimbrial usher proteinQuickGO ontologyBLASTP
44738164474166351GerE-family regulatory proteinQuickGO ontologyBLASTP
44743984475063666hypothetical proteinBLASTP
44752504476089840outer membrane proteinQuickGO ontologyBLASTP
44763524476618267hypothetical proteinBLASTP
44766994477376678hypothetical proteinBLASTP
447756344838836321hypothetical proteinBLASTP
448389644871953300hypothetical proteinBLASTP
44874594487698240hypothetical proteinBLASTP
44877764488651876hypothetical proteinBLASTP
448902044902281209IS10 transposaseQuickGO ontologyBLASTP
44904694491194726hypothetical proteinBLASTP
449159644932211626hypothetical proteinBLASTP
44932324493489258hypothetical proteinBLASTP
44939784494586609hypothetical proteinBLASTP
44949624495873912hypothetical proteinBLASTP
44960784496539462hypothetical proteinBLASTP
44965564497221666hypothetical proteinBLASTP
44975714498344774DNA-binding transcriptional repressor UxuRQuickGO ontologyBLASTP
449834544993581014tryptophanyl-tRNA synthetase IIQuickGO ontologyBLASTP
44996554499807153hypothetical proteinBLASTP
45000764500606531hypothetical proteinBLASTP