Pre_GI Gene

Some Help

Host: NC_010816 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010816:1319921 Bifidobacterium longum DJO10A, complete genome

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: This organism is found in adult humans and formula fed infants as a normal component of gut flora. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
131992113209551035Homoserine trans-succinylaseQuickGO ontologyBLASTP
1321171132124474tRNA-MetQuickGO ontology
13214951322166672IntegraseQuickGO ontologyBLASTP
13222161322488273hypothetical proteinBLASTP
13224721322756285hypothetical proteinBLASTP
13228221323085264phage holin-like proteinQuickGO ontologyBLASTP
132316613244011236Phage lysin-like lysozyme M1QuickGO ontologyBLASTP
13244591324782324hypothetical protein
13247791324913135hypothetical protein
13249101325245336hypothetical protein
132507113263151245Reverse transcriptaseQuickGO ontologyBLASTP
132673213283121581hypothetical protein
13283291329051723hypothetical protein
13290381329205168hypothetical protein
13292051329801597Phage transcriptional regulatorQuickGO ontology
132981113335303720Phage tail fiber proteinQuickGO ontologyBLASTP
13335501334332783hypothetical protein
133435113377643414Mu-like phage minor tail proteinQuickGO ontologyBLASTP
13378251338145321hypothetical protein
13382051338795591Phage major tail proteinQuickGO ontologyBLASTP
13388261339191366hypothetical proteinBLASTP
13391881339463276hypothetical protein
13394751339810336hypothetical proteinBLASTP
13398071340259453hypothetical proteinBLASTP
13402711340585315hypothetical protein
13405851341490906Phage major head proteinQuickGO ontologyBLASTP
13415361342069534Phage helicaseQuickGO ontology
134218013435351356hypothetical proteinBLASTP
134345913449821524Phage portal proteinQuickGO ontologyBLASTP
134498213464151434Phage terminase large subunitQuickGO ontologyBLASTP
13463991346692294hypothetical protein
13467771347133357hypothetical protein
1347278134737699tRNA-SerQuickGO ontology
13474731348294822hypothetical protein
13484601348645186hypothetical protein
13486421348872231hypothetical protein
13488941349100207WhiB-type transcriptional regulatorQuickGO ontologyBLASTP
13491041349349246hypothetical protein
13493461349768423hypothetical protein
13497821350111330hypothetical protein
1350286135036075hypothetical protein
13504341350616183hypothetical protein
1350613135071199hypothetical protein
13507081351076369hypothetical proteinBLASTP
13510731351717645OligoribonucleaseQuickGO ontologyBLASTP
13517141352112399hypothetical proteinBLASTP
135210913531251017hypothetical protein
13534681353905438hypothetical protein
13539191354458540Single-stranded DNA-binding proteinQuickGO ontologyBLASTP
13544581354940483hypothetical protein
13549371355176240hypothetical protein
13555281355695168hypothetical protein
13556921355874183hypothetical protein
13558861356785900Membrane proteaseQuickGO ontologyBLASTP
13568851357064180hypothetical protein
13571551357688534hypothetical protein
13576851358119435hypothetical protein
13581161358283168Phage repressorQuickGO ontology
13584601358840381Xre-type transcriptional regulatorQuickGO ontology
13589721359253282hypothetical protein
135921913612732055hypothetical proteinBLASTP
136145413636942241Trehalose-6-phosphate hydrolaseQuickGO ontologyBLASTP