Pre_GI Gene

Some Help

Host: NC_010816 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010816:1274702 Bifidobacterium longum DJO10A, complete genome

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: This organism is found in adult humans and formula fed infants as a normal component of gut flora. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12747021275568867tRNA-guanine-N1-methyltransferaseQuickGO ontologyBLASTP
12755921276086495N6-adenine-specific methylaseQuickGO ontologyBLASTP
127643012792612832RecG-like helicaseQuickGO ontologyBLASTP
12793731279567195Ribosomal protein L28QuickGO ontologyBLASTP
127997112809871017Ribokinase family sugar kinaseQuickGO ontologyBLASTP
128117512824521278Putative permeaseQuickGO ontologyBLASTP
12826501282964315Arsenical resistance operon repressorQuickGO ontologyBLASTP
128305012840631014Hypothetical permeaseQuickGO ontologyBLASTP
12841091284486378hypothetical proteinBLASTP
12845791284899321Arsenate reductaseQuickGO ontologyBLASTP
128489612859391044Arsenite efflux pumpQuickGO ontologyBLASTP
128613712872251089Xre-type transcriptional regulatorQuickGO ontologyBLASTP
12876041287789186hypothetical protein
12877861287950165hypothetical protein
12882621288399138hypothetical protein
12888151289039225hypothetical protein
1289379128945476tRNA-ValQuickGO ontology
1289503128957472tRNA-ValQuickGO ontology
1289621128969373tRNA-GlyQuickGO ontology
12898781290087210Putative flavoproteinQuickGO ontology
12905701291103534Methylated DNA-protein cysteine methyltransferaseQuickGO ontologyBLASTP
129142512928311407hypothetical proteinBLASTP
12929221293653732AcrR-type transcriptional regulatorQuickGO ontologyBLASTP
129377112952041434Aspartate ammonia-lyaseQuickGO ontologyBLASTP
12952851296082798Small-conductance mechanosensitive channelQuickGO ontologyBLASTP
129612112971431023Putative metal-dependent membrane proteaseQuickGO ontologyBLASTP
129745912987361278ABC-type spermidineputrescine transport systems ATPase componentQuickGO ontologyBLASTP