Pre_GI Gene

Some Help

Host: NC_009495 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009495:3832500 Clostridium botulinum A str. ATCC 3502 chromosome, complete genome

Host Lineage: Clostridium botulinum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well-studied Hall strain that produces type A toxin. Produces botulinum, one of the most potent toxins known. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism produces one of the most potent and deadly neurotoxins known, a botulinum toxin that prevents the release of acetylcholine at the neuromuscular junction, thereby inhibiting muscle contraction and causing paralysis. In most cases the diseased person dies of asphyxiation as a result of paralysis of chest muscles involved in breathing. The spores are heat-resistant and can survive in inadequately heated, prepared, or processed foods. Spores germinate under favorable conditions (anaerobiosis and substrate-rich environment) and bacteria start propagating very rapidly, producing the toxin. Botulinum toxin, and C. botulinum cells, has been found in a wide variety of foods, including canned ones. Almost any food that has a high pH (above 4.6) can support growth of the bacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38325103832995486hypothetical proteinBLASTP
38331023833533432hypothetical proteinBLASTP
38337143834619906LysR family transcriptional regulatorQuickGO ontologyBLASTP
383470738359031197subtilaseQuickGO ontologyBLASTP
38359383836819882LysR family transcriptional regulatorQuickGO ontologyBLASTP
38368483837795948D-isomer specific 2-hydroxyacid dehydrogenaseQuickGO ontologyBLASTP
38379953838834840acetyl-CoA carboxylase carboxyl transferase subunit alphaQuickGO ontologyBLASTP
38388813839750870acetyl-CoA carboxylase carboxyl transferase subunit betaQuickGO ontologyBLASTP
383977038411161347biotin carboxylaseQuickGO ontologyBLASTP
384114838415824353R-hydroxymyristoyl-ACP dehydrataseQuickGO ontologyBLASTP
38416023842078477acetyl-CoA carboxylase biotin carboxyl carrier proteinQuickGO ontologyBLASTP
3842082384332912483-oxoacyl-ACP synthaseQuickGO ontologyBLASTP
384334038440987593-ketoacyl-ACP reductaseQuickGO ontologyBLASTP
38441043845048945malonyl CoA-acyl carrier protein transacylaseQuickGO ontologyBLASTP
38450693845995927oxidoreductase 2-nitropropane dioxygenaseQuickGO ontologyBLASTP
38461213846345225acyl carrier proteinQuickGO ontologyBLASTP
384638638473669813-oxoacyl-ACP synthaseQuickGO ontologyBLASTP
38473593847835477MarR family transcriptional regulatorQuickGO ontologyBLASTP
384785138489091059oxidoreductase 2-nitropropane dioxygenaseQuickGO ontologyBLASTP
38490063849941936peptidaseQuickGO ontologyBLASTP
38501223851108987DNA replication protein DnaDQuickGO ontologyBLASTP
38511013852078978DNA replication protein DnaCQuickGO ontologyBLASTP
3852169385224476tRNA-ThrQuickGO ontologyBLASTP
3852249385232577tRNA-AspQuickGO ontologyBLASTP
3852335385241076tRNA-ValQuickGO ontologyBLASTP
3852560385263677tRNA-AspQuickGO ontologyBLASTP
3852644385271976tRNA-ValQuickGO ontologyBLASTP
3852818385289376tRNA-ThrQuickGO ontologyBLASTP
3852898385297477tRNA-AspQuickGO ontologyBLASTP
3852984385305976tRNA-ValQuickGO ontologyBLASTP
38533243854133810hypothetical proteinBLASTP
38541463854520375CoA-binding proteinQuickGO ontologyBLASTP
385470138559301230pyridine nucleotide-disulfide oxidoreductaseQuickGO ontologyBLASTP
38560323856781750acyl-ACP thioesteraseQuickGO ontologyBLASTP
38568843857069186hypothetical proteinBLASTP
385719538584811287adenylosuccinate synthetaseQuickGO ontologyBLASTP
385871338600981386pyridine nucleotide-disulfide oxidoreductaseQuickGO ontologyBLASTP
38602643860479216hypothetical proteinBLASTP
386067238623931722phosphoglucomutasephosphomannomutaseQuickGO ontologyBLASTP
386263538639721338replicative DNA helicaseQuickGO ontologyBLASTP
386400338659221920ATP-dependent protease LaQuickGO ontologyBLASTP
3865933386637644450S ribosomal protein L9QuickGO ontologyBLASTP
386637638683611986DHH family proteinQuickGO ontologyBLASTP
386836238693661005hypothetical proteinBLASTP
38693783869695318hypothetical proteinBLASTP
3869843387008524330S ribosomal protein S18QuickGO ontologyBLASTP
38701043870550447single-strand binding proteinQuickGO ontologyBLASTP
3870566387085028530S ribosomal protein S6QuickGO ontologyBLASTP
3870956387210411492-hydroxyacyl-CoA dehydratase subunit betaQuickGO ontologyBLASTP
38723783872575198hypothetical proteinBLASTP
38725913873460870mechanosensitive ion channel family proteinQuickGO ontologyBLASTP