Pre_GI Gene

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Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:1305355 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
130535513071961842protein of unknown function DUF885QuickGO ontologyBLASTP
130733213084711140putative oxygen-independent coproporphyrinogen III oxidaseQuickGO ontologyBLASTP
13084711309142672non-canonical purine NTP pyrophosphatase rdgBHAM1 familyQuickGO ontologyBLASTP
13092121309646435hypothetical proteinBLASTP
13097331310023291protein of unknown function DUF167QuickGO ontologyBLASTP
13100241310572549protein of unknown function YGGTQuickGO ontologyBLASTP
13106331311451819pyrroline-5-carboxylate reductaseQuickGO ontologyBLASTP
13115331312234702alanine racemase domain proteinQuickGO ontologyBLASTP
131227013133071038twitching motility proteinQuickGO ontologyBLASTP
131332013144321113twitching motility proteinQuickGO ontologyBLASTP
131455913156261068FerrochelataseQuickGO ontologyBLASTP
131604313170561014transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
131763013190181389putative transcriptional regulatorQuickGO ontologyBLASTP
13200771320496420Holliday junction resolvase YqgFQuickGO ontologyBLASTP
13205181321075558protein of unknown function DUF179QuickGO ontologyBLASTP
13210921321421330translation initiation factor SUI1QuickGO ontologyBLASTP
13216381321952315hypothetical protein
13221261322689564hypothetical proteinBLASTP
13229501323399450hypothetical proteinBLASTP
13235481324423876transcriptional regulator LysR familyQuickGO ontologyBLASTP
13245091324931423transmembrane pair domain proteinQuickGO ontologyBLASTP
13251481325852705OmpAMotB domain proteinQuickGO ontologyBLASTP
13258821326706825MscS Mechanosensitive ion channelQuickGO ontologyBLASTP
13267881326934147BLASTP
13269581327611654protein of unknown function UPF0126QuickGO ontologyBLASTP
132792913289361008Threonine aldolaseQuickGO ontologyBLASTP