Pre_GI Gene

Some Help

Host: NC_008278 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008278:5855401 Frankia alni ACN14a, complete genome

Host Lineage: Frankia alni; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from a green alder (Alnus crispa) growing in Tadoussac, Canada. These bacteria were originally linked to fungi, because of the mycelium-like filaments many of them form. This bacterium is able to establish a nitrogen-fixing symbiosis with alder (Alnus spp.) and myrtle (Myrica spp.), two pioneer plant genera of temperate regions, found on forest clearings, mine wastes, sand dunes and glacial moraines where nitrogen is the limiting factor. Frankia alni causes root hair deformation: it penetrates the cortical cells and induces the formation of nodules which resemble those induced by Rhizobium in legumes. These nodules are then colonized by vegetative hyphae (mycelium filaments) which differentiate into diazo-vesicles


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
58554015856252852putative methyltransferaseQuickGO ontologyBLASTP
5856551585731576523-PDG dependent phosphoglycerate mutaseQuickGO ontologyBLASTP
585748258609313450Glycine-rich cell wall structural protein precursor partial matchQuickGO ontologyBLASTP
586129558623471053hypothetical proteinBLASTP
586290858641761269Hypothetical protein putative monovalent CationProton antiporter-1 CPA1 familyQuickGO ontologyBLASTP
58644015865231831Glutamine amidotransferases class-IIQuickGO ontologyBLASTP
586539858672511854Conserved hypothetical protein putative Glycosyl hydrolase familyQuickGO ontologyBLASTP
586742058687361317hypothetical protein putative membrane proteinQuickGO ontologyBLASTP
58687605869143384Putative integral membrane protein partialQuickGO ontologyBLASTP
58693255870167843Putative integral membrane proteinQuickGO ontologyBLASTP
587018758714551269hypothetical proteinBLASTP
58717245872071348hypothetical protein putative carboxymuconolactone decarboxylase domainQuickGO ontology
587232758737031377putative integral membrane proteinQuickGO ontology
587373158750831353hypothetical protein putative membrane proteinQuickGO ontology
58756045876494891Hypothetical protein Putative hydrolase proteinQuickGO ontologyBLASTP
58764915876847357hypothetical protein
58770585877264207hypothetical protein
58775765877749174hypothetical protein
58778115878305495hypothetical protein
58783995878617219hypothetical protein putative signal peptideQuickGO ontology
587861458811512538Hypothetical protein putative Type I restriction-modification system M subunitQuickGO ontologyBLASTP
58811305882077948hypothetical proteinBLASTP
58820525882438387Putative ATPGTP binding protein partialQuickGO ontologyBLASTP
58825495882962414hypothetical protein Putative chromosome partition proteinQuickGO ontology
588322358842301008TransposaseQuickGO ontologyBLASTP
58849185885316399hypothetical protein Putative ATP-dependent DNA helicaseQuickGO ontology
58853335885503171hypothetical protein
5885474588553663hypothetical protein
58855005886129630Hypothetical protein putative signal peptideQuickGO ontology
588621658872921077hypothetical proteinBLASTP
58872895887882594Putative RNA polymerase ECF-subfamily sigma factorQuickGO ontologyBLASTP
588879858901351338hypothetical proteinBLASTP
58913445891445102hypothetical protein
58915185891631114hypothetical protein
58915575892339783Regulatory protein cII partialQuickGO ontologyBLASTP
5892286589234863hypothetical protein
589285258940181167hypothetical proteinBLASTP
58940055894991987Hypothetical protein putative plasmid proteinQuickGO ontologyBLASTP