Pre_GI Gene

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Host: NC_008271 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008271:35909 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3527235916645hypothetical proteinBLASTP
35909384882580hypothetical proteinBLASTP
3848538772288hypothetical protein
3887139257387hypothetical protein
3953640363828dichlorophenolindophenol-dependent carveol dehydrogenaseQuickGO ontologyBLASTP
4054440795252hypothetical protein
40925421871263limonene 12-monooxygenase NADH-dependentQuickGO ontologyBLASTP
4246442958495possible oxidoreductaseQuickGO ontologyBLASTP
4295844025106834-dihydroxy-2-butanone-4-phosphate synthase GTP cyclohydrolase IIQuickGO ontologyBLASTP
4425144886636probable transposaseQuickGO ontologyBLASTP
4495345264312hypothetical protein
4543545842408possible transposaseQuickGO ontologyBLASTP
4600046467468hypothetical proteinBLASTP
4658247391810possible N-acyl homoserine lactonaseQuickGO ontologyBLASTP
47515493921878probable transcriptional regulatorQuickGO ontologyBLASTP
5040250713312hypothetical protein
50747522011455aldehyde dehydrogenaseQuickGO ontologyBLASTP
5268553188504hypothetical proteinBLASTP
53502567713270protein kinase transcriptional regulator LuxR familyQuickGO ontologyBLASTP
5678157200420hypothetical proteinBLASTP
5761258307696transcriptional regulator DeoR familyQuickGO ontologyBLASTP
5856859464897phosphogluconate dehydrogenase decarboxylatingQuickGO ontologyBLASTP
59458604651008possible F420-dependent glucose-6-phosphate dehydrogenaseQuickGO ontologyBLASTP
60462621171656glucose-6-phosphate isomeraseQuickGO ontologyBLASTP
6210562461357possible transcriptional regulator WhiB familyQuickGO ontologyBLASTP