Pre_GI Gene

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Host: NC_008271 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008271:119957 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1199571211321176probable transposaseQuickGO ontologyBLASTP
121263121979717hypothetical protein
121976122527552hypothetical protein
122596122997402hypothetical protein
123132123350219possible carbonic anhydraseQuickGO ontologyBLASTP
123377123688312possible transcriptional regulatorQuickGO ontologyBLASTP
123777124145369hypothetical protein
1249311265321602hypothetical protein
126564127091528hypothetical protein
127238127576339hypothetical protein
127576128088513hypothetical protein
1286811306211941hypothetical proteinBLASTP
130618131127510hypothetical protein
131203131757555hypothetical protein
131937132473537hypothetical protein
132461133288828hypothetical proteinBLASTP
1333361343671032hypothetical proteinBLASTP
134438135034597hypothetical proteinBLASTP
135182135703522hypothetical proteinBLASTP
1357071381062400possible transposaseQuickGO ontologyBLASTP
1382081393381131probable integraserecombinase XerC and XerD familyQuickGO ontologyBLASTP