Pre_GI Gene

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Host: NC_008268 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008268:7485710 Rhodococcus sp. RHA1, complete genome

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
74857107486240531possible transposaseQuickGO ontologyBLASTP
74862377487118882possible transposaseQuickGO ontologyBLASTP
74872167487596381possible transposaseQuickGO ontologyBLASTP
74876457488121477possible glycine-rich cell wall structural protein precursorQuickGO ontology
748805574900101956possible transposaseQuickGO ontologyBLASTP
749021074914091200possible transposaseQuickGO ontologyBLASTP
74914467491949504possible insertion sequence ATP-binding proteinQuickGO ontologyBLASTP
74920347492294261hypothetical protein
74924997493359861histone-like proteinQuickGO ontology
74940967494764669hypothetical proteinBLASTP
74947487495005258hypothetical protein
749527774962871011possible NADP-dependent oxidoreductaseQuickGO ontologyBLASTP
749647274974881017possible polysaccharide deacetylaseQuickGO ontology
749754074990601521probable long-chain-fatty-acid--CoA ligaseQuickGO ontologyBLASTP
74991537500100948transcriptional regulatorQuickGO ontologyBLASTP
75002327501068837probable 3-oxoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
75011847501429246hypothetical protein
75014697502104636probable transcriptional regulator TetR familyQuickGO ontologyBLASTP
75022917502653363hypothetical proteinBLASTP
750334875044811134lipaseQuickGO ontologyBLASTP
75045947505022429hypothetical proteinBLASTP
75048697505843975hypothetical protein
75059337506475543hypothetical protein
75064937506876384hypothetical protein
75071797507808630probable transcriptional regulator TetR familyQuickGO ontologyBLASTP
75079697508517549hypothetical proteinBLASTP