Pre_GI Gene

Some Help

Host: NC_008253 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008253:3896704 Escherichia coli 536, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (536; O6:K15:H31) is a uropathogenic Escherichia coli (UPEC) that was isolated from a patient with acute pyelonephritis (inflammation of the kidney and pelvis). This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38957583896717960hypothetical protein YibQ precursorQuickGO ontologyBLASTP
389670438977381035putative glycosyl transferase YibDQuickGO ontologyBLASTP
389797738990021026threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3899012390020811972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
39004223901354933ADP-L-glycero-D-manno-heptose-6-epimeraseQuickGO ontologyBLASTP
390136439024101047ADP-heptose-LPS heptosyltransferase IIQuickGO ontologyBLASTP
39024143903394981lipopolysaccharide heptosyltransferase-1QuickGO ontologyBLASTP
390346439047171254lipid A-coresurface polymer ligase WaaLQuickGO ontologyBLASTP
39047633905746984putative beta13-glucosyltransferase WaaVQuickGO ontologyBLASTP
390582839068561029UDP-galactosegalactosyl LPS alpha12-galactosyltransferase WaaWQuickGO ontologyBLASTP
39068823907574693lipopolysaccharide core biosynthesis protein WaaYQuickGO ontologyBLASTP
39075843908579996UDP-galactoseglucosyl LPS alpha12-galactosyltransferase WaaTQuickGO ontologyBLASTP
390859639096121017UDP-glucoseglucosyl LPS alpha13-glucosyltransferase WaaOQuickGO ontologyBLASTP
39096283910425798lipopolysaccharide core biosynthesis protein WaaPQuickGO ontologyBLASTP
391041839115421125UDP-glucoseheptosyl LPS alpha13-glucosyltransferase WaaGQuickGO ontologyBLASTP
391153939125611023lipopolysaccharide core biosynthesis glycosyl transferase WaaQQuickGO ontologyBLASTP
3913010391428712783-deoxy-D-manno-octulosonic-acid transferase WaaAQuickGO ontologyBLASTP
39142953914774480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
39148133915622810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
3915720391588716850S ribosomal protein L33QuickGO ontologyBLASTP
3915908391614423750S ribosomal protein L28QuickGO ontologyBLASTP
39163613917005645DNA repair protein RadCQuickGO ontologyBLASTP
391720139184211221flavoprotein affecting synthesis of DNA and pantothenate metabolismQuickGO ontologyBLASTP
39183993918857459deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
39189643919560597putative TetR-family transcriptional regulatorQuickGO ontologyBLASTP
39195973920238642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP