Pre_GI Gene

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Host: NC_007953 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007953:504939 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5049395059641026Putative transposase IS116IS110IS902QuickGO ontologyBLASTP
506300507106807Putative transposase IS4QuickGO ontologyBLASTP
5075695087201152Putative transposase IS116IS110IS902QuickGO ontologyBLASTP
509292509606315hypothetical protein
509759510181423hypothetical protein
510311510556246BLASTP
510546511448903BLASTP
511282511758477BLASTP
511957512220264hypothetical protein
5124385136191182outer membrane porin OmpC familyQuickGO ontologyBLASTP
5136815149311251ABC branched chain amino acid family transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
514928515788861ABC branched chain amino acid family transporter inner membrane subunitQuickGO ontologyBLASTP
515785516729945ABC branched chain amino acid family transporter inner membrane subunitQuickGO ontologyBLASTP
516726517520795ABC branched chain amino acid family transporter ATPase subunitQuickGO ontologyBLASTP
517517518230714ABC branched chain amino acid family transporter ATPase subunitQuickGO ontologyBLASTP
518851519813963Transcriptional regulator LysR familyQuickGO ontologyBLASTP
520117520881765Putative carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
520895521296402hypothetical proteinBLASTP
521293521673381hypothetical proteinBLASTP
521676522437762Putative HpcHHpaI aldolaseQuickGO ontologyBLASTP
5224405241221683Putative dehydrogenase flavoproteinQuickGO ontologyBLASTP
524119524673555hypothetical proteinBLASTP
524735525166432hypothetical proteinBLASTP
5251815263501170Putative acetyl-CoA acetyltransferaseQuickGO ontologyBLASTP
526388527368981hypothetical proteinBLASTP
5273705285331164Putative acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
5285755297771203ABC branched chain amino acid family transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP