Pre_GI Gene

Some Help

Host: NC_007492 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007492:3180480 Pseudomonas fluorescens PfO-1, complete genome

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
318048031836113132Hydrophobeamphiphile efflux-1 HAE1QuickGO ontologyBLASTP
318363931847961158Secretion protein HlyDQuickGO ontologyBLASTP
31849163185512597transcriptional regulator NfxBQuickGO ontologyBLASTP
31858323186830999Transcriptional Regulator AraC familyQuickGO ontologyBLASTP
318683731878891053Transcriptional Regulator AraC familyQuickGO ontologyBLASTP
318839931895201122GAF Sensor Signal Transduction Histidine KinaseQuickGO ontologyBLASTP
31896293190216588hypothetical proteinBLASTP
31902373190494258hypothetical protein
319061331917731161Integrase catalytic regionQuickGO ontologyBLASTP
31919993192733735NADP oxidoreductase coenzyme F420-dependentQuickGO ontologyBLASTP
31929553193701747NADP oxidoreductase coenzyme F420-dependentQuickGO ontologyBLASTP
31938843194315432Transcriptional Regulator MarR familyQuickGO ontologyBLASTP
31945253195283759Short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
31953813195968588Transcriptional Regulator TetR familyQuickGO ontologyBLASTP
31961423197107966D-isomer specific 2-hydroxyacid dehydrogenase NAD-bindingQuickGO ontologyBLASTP
31971343198006873hypothetical proteinBLASTP
319811431994211308Sodiumdicarboxylate symporterQuickGO ontologyBLASTP
319952432006931170Mandelate racemasemuconate lactonizing enzymeQuickGO ontologyBLASTP
32007933201665873Transcriptional Regulator LysR familyQuickGO ontologyBLASTP
32017003202131432hypothetical proteinBLASTP
32022523202620369hypothetical protein
32025813203048468Protein-methionine-S-oxide reductaseQuickGO ontologyBLASTP
32030413203967927Homocysteine S-methyltransferaseQuickGO ontologyBLASTP
32039643204941978Substrate-binding region of ABC-type glycine betaine transport systemQuickGO ontologyBLASTP
320502932071252097Glycine betaineL-proline ABC transporter ATPasepermease fusion protein putativeQuickGO ontologyBLASTP
32074753208407933Transcriptional Regulator LysR familyQuickGO ontologyBLASTP
32086163209599984Short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
320965832109681311transporter putativeQuickGO ontologyBLASTP
32111423212044903hypothetical proteinBLASTP
32121663212966801Alphabeta hydrolase foldQuickGO ontologyBLASTP
32130873214016930Zinc transporter ZIPQuickGO ontologyBLASTP
32140783214953876Manganese containing catalaseQuickGO ontologyBLASTP
32152143215729516CinA-likeQuickGO ontologyBLASTP
32157423216044303hypothetical proteinBLASTP
32161403216637498hypothetical proteinBLASTP
32166903217010321hypothetical proteinBLASTP
321716432184801317Amino acid permease-associated regionQuickGO ontologyBLASTP
321877532201931419Transposase IS4QuickGO ontologyBLASTP
32203033220668366hypothetical proteinBLASTP
322137332227581386Gluconate transporterQuickGO ontologyBLASTP
32230553223909855Amidohydrolase 2QuickGO ontologyBLASTP
322393032252191290General substrate transporterQuickGO ontologyBLASTP
32253563226087732Transcriptional Regulator GntR familyQuickGO ontologyBLASTP
322628632276591374hypothetical proteinBLASTP
32276953228540846Amino acid ABC transporter permease protein 3-TM region HisGluGlnArgopineQuickGO ontologyBLASTP
32285373229358822extracellular solute-binding protein family 3QuickGO ontologyBLASTP
322960132307191119Twin-arginine translocation pathway signalQuickGO ontologyBLASTP
32308393231765927Transcriptional Regulator LysR familyQuickGO ontologyBLASTP
323195732333931437Aldehyde dehydrogenaseQuickGO ontologyBLASTP
32334043233742339Carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
323373932347401002Zinc-containing alcohol dehydrogenase superfamilyQuickGO ontologyBLASTP