Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:4434259 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
443425944364422184TonB-dependent receptorQuickGO ontologyBLASTP
443670744381311425oxidoreductase FAD-bindingQuickGO ontologyBLASTP
44381574439104948transcriptional regulator LysR familyQuickGO ontologyBLASTP
443915344404721320major facilitator family transporterQuickGO ontologyBLASTP
44405624441041480hypothetical proteinBLASTP
44411124441798687hypothetical protein
44417984442766969hypothetical protein
444299344442131221hypothetical proteinBLASTP
44445594444942384MazG nucleotide pyrophosphohydrolase domain proteinQuickGO ontologyBLASTP
444496744468411875ATPGTP-binding protein putativeQuickGO ontologyBLASTP
44471324447515384hypothetical proteinBLASTP
44477474448595849hypothetical proteinBLASTP
444872144508142094sulfatase family proteinQuickGO ontologyBLASTP
44508044451415612hypothetical protein
445141544527101296BNRAsp-box repeat proteinQuickGO ontologyBLASTP
44527564453301546cytochrome b561 family proteinQuickGO ontologyBLASTP
44533014453636336hypothetical proteinBLASTP
44537384454400663DNA-binding response regulator QseB putativeQuickGO ontologyBLASTP
445439744557791383sensor histidine kinaseQuickGO ontologyBLASTP
44559704456512543hypothetical proteinBLASTP
44565884457361774cis-diol dehydrogenaseQuickGO ontologyBLASTP
445761444586271014benzoate 12-dioxygenase ferredoxin reductase subunitQuickGO ontologyBLASTP