Pre_GI: BLASTP Hits

Some Help

Query: NC_017375:1498000:1504086 Helicobacter pylori 83 chromosome, complete genome

Start: 1504086, End: 1504448, Length: 363

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012752:1:106051060511243639Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmidconserved hypothetical protein HDEF_p00102e-0960.8
NC_018939:1044000:106270510627051063361657Helicobacter pylori 26695 chromosome, complete genomePARA protein4e-64242
NC_000915:1044000:106268710626871063343657Helicobacter pylori 26695, complete genomePARA protein4e-64242
NC_017375:77142:899468994690623678Helicobacter pylori 83 chromosome, complete genomePARA protein5e-43172
NC_014256:448710:470816470816471472657Helicobacter pylori B8 chromosome, complete genomeputative chromosome partitioning protein6e-64242
NC_014256:485969:505645505645506313669Helicobacter pylori B8 chromosome, complete genomehypothetical protein4e-40163
NC_017358:220900:248978248978249634657Helicobacter pylori Cuz20 chromosome, complete genomePARA protein9e-65244
NC_017063:834674:868078868078868746669Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein4e-40163
NC_017366:1055319:107175710717571072407651Helicobacter pylori F32, complete genomePARA protein6e-43172
NC_017367:278916:305477305477306133657Helicobacter pylori F57, complete genomePARA protein6e-66248
NC_011333:1040192:106684210668421067498657Helicobacter pylori G27 chromosome, complete genomePARA protein9e-64241
NC_017371:1030148:105018210501821050838657Helicobacter pylori Gambia94/24 chromosome, complete genomechromosome partitioning protein ParA1e-64244
NC_017371:1470582:149017814901781490846669Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein5e-40162
NC_017372:748097:768038768038768688651Helicobacter pylori India7 chromosome, complete genomehypothetical protein6e-43172
NC_000921:1007519:103734310373431037885543Helicobacter pylori J99, complete genomehypothetical protein1e-39161
NC_017362:1512959:153600315360031536671669Helicobacter pylori Lithuania75 chromosome, complete genomehypothetical protein1e-38158
NC_011498:448000:470785470785471441657Helicobacter pylori P12, complete genomechromosome partitioning protein2e-64243
NC_014555:1526775:155866315586631559319657Helicobacter pylori PeCan4 chromosome, complete genomechromosome partitioning protein ParA4e-64243
NC_017378:1518529:153698015369801537648669Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein3e-42170
NC_017379:1035464:103816410381641038820657Helicobacter pylori Puno135 chromosome, complete genomePARA protein2e-64243
NC_010698:870312:892053892053892709657Helicobacter pylori Shi470, complete genomePARA protein7e-65245
NC_014560:1366747:139539413953941396062669Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein4e-40163
NC_017376:57500:787557875579411657Helicobacter pylori SNT49 chromosome, complete genomeputative chromosome partitioning protein1e-64244
NC_017361:930280:951974951974952630657Helicobacter pylori SouthAfrica7 chromosome, complete genomePARA protein2e-63240
NC_017361:1528239:154924715492471549909663Helicobacter pylori SouthAfrica7 chromosome, complete genomePARA protein2e-63240
NC_013958:29548:295482954830222675Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequenceCobyrinic acid ac-diamide synthase6e-0856.2
NC_015694:48344:103010301659630Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequenceCobyrinic acid ac-diamide synthase5e-0753.1