Pre_GI: BLASTN Hits

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Query: NC_017062:547317 Rickettsia typhi str. B9991CWPP chromosome, complete genome

Start: 547317, End: 570112, Length: 22796

Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008009:4421992*4421992444911527124Acidobacteria bacterium Ellin345, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_018643:482676*48267650224119566Alpha proteobacterium HIMB5 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008277:485299*48529951060325305Borrelia afzelii PKo, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_001318:479709*47970950779828090Borrelia burgdorferi B31, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010673:479552*47955250738827837Borrelia hermsii DAH, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010424:14657*146574330928653Candidatus Desulforudis audaxviator MP104C, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014774:1120383*1120383115550835126Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_007205:1*11956919569Candidatus Pelagibacter ubique HTCC1062, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_021182:93000*9300014465551656Clostridium pasteurianum BC1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015663:3466471*3466471350514038670Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015968:1709680*1709680173221922540Enterobacter asburiae LF7a chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014121:2629075*2629075265233623262Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome7e-0763.9BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_016027:2387832*2387832241009922268Gluconacetobacter xylinus NBRC 3288, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007778:1053462*1053462107959926138Rhodopseudomonas palustris HaA2, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009879:83522783522785649021264Rickettsia canadensis str. McKiel, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010067:1782998*1782998180098317986Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete7e-0763.9BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-0763.9BLASTN svgBLASTP svg
NC_006905:1186895*1186895121502828134Salmonella enterica subsp. enterica serovar Choleraesuis str7e-0763.9BLASTN svgBLASTP svg
NC_011083:12165001216500123593619437Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-0763.9BLASTN svgBLASTP svg
NC_011080:12099351209935123471124777Salmonella enterica subsp. enterica serovar Newport str. SL254,7e-0763.9BLASTN svgBLASTP svg
NC_006511:1770000*1770000179181621817Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0661.9BLASTN svgBLASTP svg
NC_010102:1979742*1979742200183422093Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,7e-0763.9BLASTN svgBLASTP svg
NC_003198:1117687*1117687114274925063Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0765.9BLASTN svgBLASTP svg
NC_004631:1842050*1842050186312621077Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-0765.9BLASTN svgBLASTP svg
NC_003197:12075971207597123259925003Salmonella typhimurium LT2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013517:2437574*2437574248761650043Sebaldella termitidis ATCC 33386, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002978:918000*91800094009922100Wolbachia endosymbiont of Drosophila melanogaster, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012416:979484*979484100275723274Wolbachia sp. wRi, complete genome7e-0763.9BLASTN svgBLASTP svg