Pre_GI: BLASTN Hits

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Query: NC_016908:563747 Rickettsia rickettsii str. Colombia chromosome, complete genome

Start: 563747, End: 586452, Length: 22706

Host Lineage: Rickettsia rickettsii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens and is composed of two groups, the spotted fever group, and the typhus group. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. This organism was first identified by Dr. Howard Rickets as the causative agent of Rocky Mountain Spotted Fever, which was originally named for its geographic distribution at the time, it is now known to be widespread throughout the North American continent. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. It is passed to the human host from a tick bite, and the tick acts as both a natural reservoir and a vector for disease transmission. Once the organism is endocytosed by the host cell, it quickly escapes the phagozome, and replicates intracellularly, causing cell death and tissue damage. The disease is characterized by a spotted rash and has a high mortality rate if left untreated.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012633:12000*120003409922100Rickettsia africae ESF-5, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012633:98000*9800012009922100Rickettsia africae ESF-5, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012633:1145500*1145500116442718928Rickettsia africae ESF-5, complete genome3e-18101BLASTN svgBLASTP svg
NC_009881:166500*16650019436227863Rickettsia akari str. Hartford, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009881:562000*56200058446322464Rickettsia akari str. Hartford, complete genome04318BLASTN svgBLASTP svg
NC_009881:92929*9292911990326975Rickettsia akari str. Hartford, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009883:14290001429000145248923490Rickettsia bellii OSU 85-389, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009883:277409*27740930010322695Rickettsia bellii OSU 85-389, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009883:11975001197500121859921100Rickettsia bellii OSU 85-389, complete genome0854BLASTN svgBLASTP svg
NC_007940:669143*66914368959920457Rickettsia bellii RML369-C, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009879:10354461035446106011424669Rickettsia canadensis str. McKiel, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_009879:670169*67016968976419596Rickettsia canadensis str. McKiel, complete genome03461BLASTN svgBLASTP svg
NC_009879:83522783522785649021264Rickettsia canadensis str. McKiel, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009879:141000*14100016835327354Rickettsia canadensis str. McKiel, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009879:107890*10789012574317854Rickettsia canadensis str. McKiel, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_003103:266013*26601328459918587Rickettsia conorii str. Malish 7, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003103:12114*121143207519962Rickettsia conorii str. Malish 7, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003103:563961*56396158206318103Rickettsia conorii str. Malish 7, complete genome016180BLASTN svgBLASTP svg
NC_003103:22595622595624833922384Rickettsia conorii str. Malish 7, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003103:70000*700009245822459Rickettsia conorii str. Malish 7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003103:11338061133806115644922644Rickettsia conorii str. Malish 7, complete genome2e-22115BLASTN svgBLASTP svg
NC_007110:112626026260Rickettsia felis URRWXCal2 plasmid pRF, complete sequence2e-22115BLASTN svgBLASTP svg
NC_007109:11052511105251112857523325Rickettsia felis URRWXCal2, complete genome1e-20109BLASTN svgBLASTP svg
NC_007109:80833180833182664718317Rickettsia felis URRWXCal2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007109:89400089400091609922100Rickettsia felis URRWXCal2, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007109:13350371335037135749822462Rickettsia felis URRWXCal2, complete genome2e-22115BLASTN svgBLASTP svg
NC_015866:1144958*1144958116861223655Rickettsia heilongjiangensis 054 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_015866:767790*76779079562627837Rickettsia heilongjiangensis 054 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015866:14071*140713274218672Rickettsia heilongjiangensis 054 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015866:274550*27455029923324684Rickettsia heilongjiangensis 054 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_016050:23600023600025587419875Rickettsia japonica YH, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_016050:771752*77175279719725446Rickettsia japonica YH, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_016050:1149000*1149000117209923100Rickettsia japonica YH, complete genome1e-20109BLASTN svgBLASTP svg
NC_016050:182218*18221820254820331Rickettsia japonica YH, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_016050:15224152243358318360Rickettsia japonica YH, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_016050:73993*739939772123729Rickettsia japonica YH, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009900:23198323198325409922117Rickettsia massiliae MTU5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009900:180970*18097020133120362Rickettsia massiliae MTU5, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009900:12200821220082123809918018Rickettsia massiliae MTU5, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_012730:33250033250035137618877Rickettsia peacockii str. Rustic, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_012730:293634*29363431769424061Rickettsia peacockii str. Rustic, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012730:131445*13144515343621992Rickettsia peacockii str. Rustic, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012730:652092*65209267059918508Rickettsia peacockii str. Rustic, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012730:411526*41152643309921574Rickettsia peacockii str. Rustic, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_000963:506500*50650052532718828Rickettsia prowazekii str. Madrid E, complete genome02872BLASTN svgBLASTP svg
NC_009882:563830*56383058653522706Rickettsia rickettsii str. 'Sheila Smith', complete genome021260BLASTN svgBLASTP svg
NC_009882:11237091123709114614722439Rickettsia rickettsii str. 'Sheila Smith', complete genome1e-20109BLASTN svgBLASTP svg
NC_009882:23240023240025009917700Rickettsia rickettsii str. 'Sheila Smith', complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009882:13826*138263610122276Rickettsia rickettsii str. 'Sheila Smith', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009882:100000*10000012209922100Rickettsia rickettsii str. 'Sheila Smith', complete genome3e-18101BLASTN svgBLASTP svg
NC_010263:11359321135932115460218671Rickettsia rickettsii str. Iowa, complete genome1e-20109BLASTN svgBLASTP svg
NC_010263:23248223248225109918618Rickettsia rickettsii str. Iowa, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010263:563814*56381458651822705Rickettsia rickettsii str. Iowa, complete genome021250BLASTN svgBLASTP svg
NC_010263:13826*138263609922274Rickettsia rickettsii str. Iowa, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010263:100000*10000012209922100Rickettsia rickettsii str. Iowa, complete genome3e-18101BLASTN svgBLASTP svg
NC_010263:771901*77190179080218902Rickettsia rickettsii str. Iowa, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-0765.9BLASTN svgBLASTP svg